View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14452_low_6 (Length: 245)
Name: NF14452_low_6
Description: NF14452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14452_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1045851 - 1046082
Alignment:
| Q |
1 |
tgaacttctgttggtaatttttactctcattccacgtcgtggttccctgatgctagtatctggagccatatgtccgttcccttcacgtggttgtgctttc |
100 |
Q |
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| T |
1045851 |
tgaacttctgttggtaatttttactctcattccacgtcgtggttccctgatgctaggatctggagccatctgtccgttcccttcacgtggttgtgctttc |
1045950 |
T |
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| Q |
101 |
attttgttatgactacttacagaatgtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacgatggtggcgacggtggatgtgggtgg |
200 |
Q |
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| T |
1045951 |
attttgttctgactacttacagaatgtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacgacggtggcgacggtggaggtgggtgg |
1046050 |
T |
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| Q |
201 |
tcaccggtcggtggatggtcatgagagaggtg |
232 |
Q |
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| T |
1046051 |
tcaccggtcggtggatggtcatgagagaggtg |
1046082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36575656 - 36575887
Alignment:
| Q |
1 |
tgaacttctgttggtaatttttactctcattccacgtcgtggttccctgatgctagtatctggagccatatgtccgttcccttcacgtggttgtgctttc |
100 |
Q |
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| T |
36575656 |
tgaacttctgttggtaatttttactctcattccacgtcgtggttccctgatgctaggatctggagccatctgtccgttccctttacgtggttgtgctttc |
36575755 |
T |
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| Q |
101 |
attttgttatgactacttacagaatgtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacgatggtggcgacggtggatgtgggtgg |
200 |
Q |
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| T |
36575756 |
attttgtcctaactacttacagaatgtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacaacggtggcaacggtggaggtgggtgg |
36575855 |
T |
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| Q |
201 |
tcaccggtcggtggatggtcatgagagaggtg |
232 |
Q |
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| T |
36575856 |
tcaccggtcggtggatggtcatgagagaggtg |
36575887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 35836128 - 35836220
Alignment:
| Q |
126 |
gtttcactgaaagaaagaaggaagaggtaggttgtagtggttgcaaacgatggtggcgacggtggatgtgggtggtcaccggtcggtggatgg |
218 |
Q |
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| T |
35836128 |
gtttcactgaaagaaagaaggaagaggtagttcgtagtggttgcaaagtacggtggcgacggtggaggtgggtggtcgccggttagtggatgg |
35836220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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