View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14452_low_8 (Length: 242)
Name: NF14452_low_8
Description: NF14452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14452_low_8 |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 33410497 - 33410274
Alignment:
| Q |
19 |
atcattcaactaaaaacagaaggaagaaagtggtatgtttgtggtgttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410497 |
atcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccg |
33410398 |
T |
|
| Q |
119 |
aaggtgcacctgctccttctcctccaccttcttctgatgcccactctgtgttttcatctgtgtttggagttgtcatggcaaccatggttgctattgtagc |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||| |||| || |
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| T |
33410397 |
aaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaattgcagt |
33410298 |
T |
|
| Q |
219 |
tatctttgcataagagaattagga |
242 |
Q |
| |
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|||||||||| ||||| |||||| |
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| T |
33410297 |
catctttgcatgagagacttagga |
33410274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 33424399 - 33424176
Alignment:
| Q |
19 |
atcattcaactaaaaacagaaggaagaaagtggtatgtttgtggtgttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424399 |
atcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccg |
33424300 |
T |
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| Q |
119 |
aaggtgcacctgctccttctcctccaccttcttctgatgcccactctgtgttttcatctgtgtttggagttgtcatggcaaccatggttgctattgtagc |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||| |||| || |
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| T |
33424299 |
aaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaattgcagt |
33424200 |
T |
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| Q |
219 |
tatctttgcataagagaattagga |
242 |
Q |
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|||||||||| ||||| |||||| |
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| T |
33424199 |
catctttgcatgagagacttagga |
33424176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 33416346 - 33416123
Alignment:
| Q |
19 |
atcattcaactaaaaacagaaggaagaaagtggtatgtttgtggtgttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccg |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416346 |
atcattcaactaaaaactgaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccg |
33416247 |
T |
|
| Q |
119 |
aaggtgcacctgctccttctcctccaccttcttctgatgcccactctgtgttttcatctgtgtttggagttgtcatggcaaccatggttgctattgtagc |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||| |||| || |
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| T |
33416246 |
aaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaatcatggttgcaattgcagt |
33416147 |
T |
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| Q |
219 |
tatctttgcataagagaattagga |
242 |
Q |
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|||||||||| ||||| |||||| |
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| T |
33416146 |
catctttgcatgagagacttagga |
33416123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 33428199 - 33428400
Alignment:
| Q |
28 |
ctaaaaacagaaggaagaaagtggtatgtttgtggtgttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccgaaggtgcac |
127 |
Q |
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||||| || |||| || |||||||||||||||||| | |||||| ||||||| |||||||| |||||||| |||||||||||||||| ||| |||| | |
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| T |
33428199 |
ctaaagactgaagaaacaaagtggtatgtttgtggcatagctgataactgttctgctcgtcacatgaagttcatcatcactgttctagcagaaagtgccc |
33428298 |
T |
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| Q |
128 |
ctgctccttctcctccaccttcttctgatgcccactctgtgttttcatctgtgtttggagttgtcatggcaaccatggttgctattgtagctatctttgc |
227 |
Q |
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|||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
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| T |
33428299 |
ctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatggcaaccatggttgcaattgcagtcatctttgc |
33428398 |
T |
|
| Q |
228 |
at |
229 |
Q |
| |
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|| |
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| T |
33428399 |
at |
33428400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 33436551 - 33436374
Alignment:
| Q |
19 |
atcattcaactaaaaacagaaggaagaaagtggtatgtttgtggtgttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||| ||||||||| || ||||||||||||||||| | |
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| T |
33436551 |
atcattcaactaaaaacagaaggaagaaagtggtatgtttgtggcgtagctgatcattgttctgctcatcaaatgaaatttgtcatcactgttctagcag |
33436452 |
T |
|
| Q |
119 |
aaggtgcacctgctccttctcctccaccttcttctgatgcccactctgtgttttcatctgtgtttggagttgtcatgg |
196 |
Q |
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|||| |||||||||||||| ||||| || |||||| |||| |||||| | | |||||| |||||||||||||||||| |
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| T |
33436451 |
aaggcgcacctgctccttcccctcctccatcttctaatgctcactctattgtatcatctatgtttggagttgtcatgg |
33436374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 5226 - 5403
Alignment:
| Q |
19 |
atcattcaactaaaaacagaaggaagaaagtggtatgtttgtggtgttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccg |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| |||| |||||| ||||| ||||||||||||||||| | |
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| T |
5226 |
atcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcattgttctgctcatcaaataaagtttgtcatcactgttctagcag |
5325 |
T |
|
| Q |
119 |
aaggtgcacctgctccttctcctccaccttcttctgatgcccactctgtgttttcatctgtgtttggagttgtcatgg |
196 |
Q |
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|||| ||| |||||||||| |||| || |||||| |||| |||||| | | |||||| |||||||||| ||||||| |
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| T |
5326 |
aaggcgcatctgctccttccactcctccatcttctaatgctcactctattgtatcatctatgtttggagtcgtcatgg |
5403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 24985137 - 24985253
Alignment:
| Q |
22 |
attcaactaaaaacagaaggaagaaagtggtatgtttgtggtgttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccgaag |
121 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| ||||| || |||| || | ||||||||||||||| | ||||||| ||| |||| |||| |
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| T |
24985137 |
attcaactgaaaaccgaaggaagaaagtggtatgtatgtggaaaggcaaatcattgcgctgctcgtcaaatgaagcttgtcatcaatgtactagaagaag |
24985236 |
T |
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| Q |
122 |
gtgcacctgctccttct |
138 |
Q |
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|||||||| | |||||| |
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| T |
24985237 |
gtgcaccttcgccttct |
24985253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 24990967 - 24991083
Alignment:
| Q |
22 |
attcaactaaaaacagaaggaagaaagtggtatgtttgtggtgttgctgatcactgttcggctcgtcaaatgaagttggtcatcactgttctagccgaag |
121 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||| || |||| || | ||||||||||||||| | ||||||| ||| |||| |||| |
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| T |
24990967 |
attcaactgaaaaccgaaggaagaaagtggtatgtatgtggaaaggcaaatcattgcgctgctcgtcaaatgaagcttgtcatcaatgtactagaagaag |
24991066 |
T |
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| Q |
122 |
gtgcacctgctccttct |
138 |
Q |
| |
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|||||||| | |||||| |
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| T |
24991067 |
gtgcaccttcgccttct |
24991083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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