View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14453_high_1 (Length: 419)
Name: NF14453_high_1
Description: NF14453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14453_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 33 - 405
Target Start/End: Original strand, 3425619 - 3425995
Alignment:
| Q |
33 |
tcggagcgtgctctttctaaaggttttagatttgattctctctagtactaatttaagtaagataatttagcttaaaaaat-cagatcatcttcttctgta |
131 |
Q |
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| T |
3425619 |
tcggagcgtgctctttctaaagatttcagatttgattctctctagtactaatttaaataagataatttagcttaaaaaaaacagttcatctccttctata |
3425718 |
T |
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| Q |
132 |
cctcaattttaatgttaggaaaagtctaatcacctcacacccataactaactaaaacagattttctttgtctaa---gttggacaaatcaaatgaaaacc |
228 |
Q |
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| T |
3425719 |
cctcaattttaatgttaggaaaagtctaatcacctcacacccataactaactaaaacagattttctttgtctaattagttggacaaatcaaatgaaaacc |
3425818 |
T |
|
| Q |
229 |
tacgattataagtcatattgtcatgcataactatgaggactaatagattaaattttatccatgtaaaaaacaaatttcacccatgtaaaaagaatcgtca |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3425819 |
tacgattataagtcatattgtcatgcataactatgaggactaatagattaaattttatccatgtaaaaaacaaatttcacccatgtaaaaagaatcgcca |
3425918 |
T |
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| Q |
329 |
tgtacacaaaatatatattttatggtgcacaagtaataaatttgttcatagtgtaatgtaacactattttaactagt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425919 |
tgtacacaaaatatatattttatggtgcacaagtaataaatttgttcatagtgtaatgtaacactattttaactagt |
3425995 |
T |
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