View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14453_low_1 (Length: 1372)

Name: NF14453_low_1
Description: NF14453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14453_low_1
NF14453_low_1
[»] chr1 (11 HSPs)
chr1 (835-1372)||(51857673-51858195)
chr1 (18-404)||(51856892-51857277)
chr1 (482-676)||(51857354-51857548)
chr1 (986-1152)||(51763613-51763777)
chr1 (988-1150)||(51382125-51382287)
chr1 (986-1143)||(51831612-51831769)
chr1 (999-1126)||(51221900-51222027)
chr1 (989-1143)||(51828959-51829114)
chr1 (998-1143)||(51782011-51782156)
chr1 (686-761)||(27533241-27533314)
chr1 (1287-1372)||(51763387-51763472)
[»] chr6 (4 HSPs)
chr6 (1015-1142)||(4183699-4183826)
chr6 (1030-1142)||(4744538-4744649)
chr6 (686-736)||(12591017-12591067)
chr6 (686-735)||(24623307-24623356)
[»] chr2 (2 HSPs)
chr2 (686-761)||(20565065-20565138)
chr2 (686-725)||(35456810-35456849)
[»] chr8 (2 HSPs)
chr8 (686-734)||(4077712-4077760)
chr8 (687-748)||(26799195-26799254)
[»] chr3 (1 HSPs)
chr3 (687-735)||(39779046-39779094)
[»] chr4 (1 HSPs)
chr4 (686-735)||(28435238-28435287)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 835 - 1372
Target Start/End: Original strand, 51857673 - 51858195
Alignment:
Q  835 gcttgcattagtagtatggtgaaagtctcagccgccttttgttgttgttctggatttgatatgatgacgacgacaacgacgacgacctgttgcaaacaag 934  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||    
T  51857673 gcttgaattagtagtatggtgaaagtctcagccgccttttgttgttgttctggatttgatatga---------------cgacgacctgttgcaaacaag 51857757  T
Q  935 gaggaaccctaaaaccaccgcctcctaccaattctcttccatttctttcgcttgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctcct 1034  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  51857758 gaggaacccaaacaccaccgcctcctaccaattctcttccatttctttcgttcgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctcct 51857857  T
Q  1035 tcacctccgttgcatctgcaagtcatggaattctcttatctctcacgattccgaattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgc 1134  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51857858 tcaactccgttgcatctgcaagtcatggaattctcttatctctcatgattccgaattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgc 51857957  T
Q  1135 caccacctcttcctaagctctctacgcacctcacgtgtgttacatctatctgattcatcaatctcctcttttttcagtcccccttccactactagtttca 1234  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51857958 caccacctcttcctaagctctctacgcacctcacgtttgttacatctatctgattcatcaatctcctcttttttcagtcccccttccactactagtttca 51858057  T
Q  1235 cccaaatcaaccactaccctcccattcttaataagaatctaaactttggtgagagagtttcaacttgtgatggcatgctctgtgttaggattgattcatc 1334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51858058 cccaaatcaaccactactctcccattcttaataagaatctaaactttggtgagagagtttcaacttatgatggcatgctctgtgttaggattgattcatc 51858157  T
Q  1335 ttcttctcttttgcgtaacccttccattagaaaattca 1372  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  51858158 ttctgctcttttgtgtaacccttccattagaaaattca 51858195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 51856892 - 51857277
Alignment:
Q  18 attgggaataagacacttattaccttcgtgagttgtacacacatctagaaataagcactcctgtcctgagagtgaaagtcaagtttgtgatagttgtcga 117  Q
    |||||||  ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51856892 attgggagaaagacacttattacctttgtgagttgtacacacacctagaaataagcactcctgtcctgagagtgaaagtcaagtttgtgatagttgtaga 51856991  T
Q  118 gacatagaaaggaaagcatgtacaaccaaatgttcgaagaaatttgttatcagaagttgtttgaaagagttaggtgtatgaaacctaaaacttgagaaga 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51856992 gacatagaaaggaaagcatgtacagccaaatgttcgaagaaatttgttatcagaagttgtttgaaagagttaggtg-atgaaacctaaaacttgagaaga 51857090  T
Q  218 acagaagtgggaagcctattgataagatagacactaaaagggcatggaagcttgcgcaagtaaggtgaaaccaagatccattatttgcctacgttttctc 317  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51857091 acaaaagtgggaagcctattgataagatagacactaaaagggcatggaagcttgcgcaagtaaggtgaaaccaagatccattatttgcctacgttttctc 51857190  T
Q  318 tttaccaacaagggacggattgttcatggattttcaaagggaaatgcaaaccggtaccccgagcactagttaagaaagtcaaaagac 404  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  51857191 tttaccaacaagggacggattgatcatggattttcaaagggaaatgcgaactggtaccccgagcactagttaaggaagtcaaaagac 51857277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 482 - 676
Target Start/End: Original strand, 51857354 - 51857548
Alignment:
Q  482 actaaaatttcctcatttaacttccttaccggtgtatgggagcacctgtcaacatgacacatttttaaaacaccgataactcaaaacatcagtctacggg 581  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  51857354 actaaaatttcctcatttgacttccttaccggtgtatgggagcacctgtcaacatgacacatttttaaatcaccgataactcaaaatttcagtctacggg 51857453  T
Q  582 gaggggagtgtcttcggtcttcacttataaacatagtttatgtcatcatttatccaatctgagactctttaataatagggaccaaaaatgcttga 676  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  51857454 gaggggagtgtcttcggtcttcacttataaacataatttatgtcatcatttgtccaatctgagactctttaataatagggactaaaaatccttga 51857548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 986 - 1152
Target Start/End: Complemental strand, 51763777 - 51763613
Alignment:
Q  986 ttgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcacctccgttgcatctgcaagtcatggaattctcttatctctcacgattc 1085  Q
    ||||||||||||||||||||||||||| |||||  |||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||| ||| |||||    
T  51763777 ttgatctcgtgacagaaattctgtgccggctcc--gtgaaacatctccttcaactctgttgcgtctgcaagtcatggaattctcttatctgtcatgattc 51763680  T
Q  1086 cgaattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgccaccacctcttcctaagc 1152  Q
     |||||||| | |||||||||||||||  |||| |||||||  |||||||||||| || ||||||||    
T  51763679 tgaattcaccaagaagcaccttcgcttcccaacttccaaccatgaccgccaccacgtcatcctaagc 51763613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 988 - 1150
Target Start/End: Complemental strand, 51382287 - 51382125
Alignment:
Q  988 gatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcacctccgttgcatctgcaagtcatggaattctcttatctctcacgattccg 1087  Q
    ||||| ||| ||||||| ||||||| ||||||||||||| | |||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||     
T  51382287 gatctggtggcagaaatcctgtgcctgctccccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaattatcttatctctcatgattcca 51382188  T
Q  1088 aattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgccaccacctcttcctaa 1150  Q
    | ||| | | |||||| ||||| |||||||||||||||| ||||||||  |||||| ||||||    
T  51382187 atttcgccaagaagcaacttcgtttgtcaacctccaaccacgaccgccggcacctcatcctaa 51382125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 986 - 1143
Target Start/End: Original strand, 51831612 - 51831769
Alignment:
Q  986 ttgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcacctccgttgcatctgcaagtcatggaattctcttatctctcacgattc 1085  Q
    |||||||||||  || ||| ||||||| |||||| ||||||  ||||||||| ||||||||  |||||||||||||||| |||||||||||| | |||||    
T  51831612 ttgatctcgtggtagtaatcctgtgccggctcccagtgaaatttctccttcaactccgttgtgtctgcaagtcatggaactctcttatctctgaagattc 51831711  T
Q  1086 cgaattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgccaccacctc 1143  Q
    | | ||||| | |||||||||||  |||||||||||||||||| ||||||||||||||    
T  51831712 caatttcaccaggaagcaccttcagttgtcaacctccaacctccaccgccaccacctc 51831769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 999 - 1126
Target Start/End: Complemental strand, 51222027 - 51221900
Alignment:
Q  999 agaaattctgtgccagctccccgtgaaaaatctccttcacctccgttgcatctgcaagtcatggaattctcttatctctcacgattccgaattcactatg 1098  Q
    |||||| ||||||| ||| ||||||||| | ||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||   | ||  | | |    
T  51222027 agaaatcctgtgccggctgcccgtgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcatgatttaaattttgccaag 51221928  T
Q  1099 aagcaccttcgcttgtcaacctccaacc 1126  Q
    ||||| |||||||||||||||| |||||    
T  51221927 aagcaacttcgcttgtcaaccttcaacc 51221900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 989 - 1143
Target Start/End: Original strand, 51828959 - 51829114
Alignment:
Q  989 atctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcacctccgttgcatctgc-aagtcatggaattctcttatctctcacgattccg 1087  Q
    |||||||||||||||| ||||||| ||||||||||||| | ||| |||| ||||||||  ||||| ||||||||||||||||||||| || | ||||||     
T  51828959 atctcgtgacagaaatactgtgcctgctccccgtgaaacacctcattcaactccgttgtgtctgcaaagtcatggaattctcttatccctgaggattcca 51829058  T
Q  1088 aattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgccaccacctc 1143  Q
    | ||  | | ||| ||||||| ||| ||||||| | ||| | ||||||||||||||    
T  51829059 attttgccaggaaacaccttcacttctcaacctacgaccacaaccgccaccacctc 51829114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 998 - 1143
Target Start/End: Original strand, 51782011 - 51782156
Alignment:
Q  998 cagaaattctgtgccagctccccgtgaaaaatctccttcacctccgttgcatctgcaagtcatggaattctcttatctctcacgattccgaattcactat 1097  Q
    ||||||| ||||| | ||||||||||||| ||||| || | |||||  |  |||| ||||||||||||||||||||||| || |||||  ||||| |||     
T  51782011 cagaaatcctgtgtctgctccccgtgaaacatctcattaaactccgccgtgtctgtaagtcatggaattctcttatctcccatgattctaaattcgctaa 51782110  T
Q  1098 gaagcaccttcgcttgtcaacctccaacctcgaccgccaccacctc 1143  Q
     || ||| |||||||||||||||| |||| ||| ||||||||||||    
T  51782111 aaaacactttcgcttgtcaacctctaaccacgatcgccaccacctc 51782156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 686 - 761
Target Start/End: Complemental strand, 27533314 - 27533241
Alignment:
Q  686 gtggtggttggggttttaaccccgaaccttccatatattatcaattgtccccctaccaactgatctaagcccacga 761  Q
    |||||||| ||||||| ||||||||||||| ||||||||||  |||||  |||||||||||||||||||| |||||    
T  27533314 gtggtggtcggggtttgaaccccgaaccttgcatatattatgcattgt--ccctaccaactgatctaagctcacga 27533241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1287 - 1372
Target Start/End: Complemental strand, 51763472 - 51763387
Alignment:
Q  1287 gagagtttcaacttgtgatggcatgctctgtgttaggattgattcatcttcttctcttttgcgtaacccttccattagaaaattca 1372  Q
    |||||||||| ||||||| || ||||||||||||  ||| ||| ||| |||| | |||||  |||||||||||||||| |||||||    
T  51763472 gagagtttcagcttgtgacggaatgctctgtgttgagatagatccatattctgcgcttttatgtaacccttccattaggaaattca 51763387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1015 - 1142
Target Start/End: Complemental strand, 4183826 - 4183699
Alignment:
Q  1015 ctccccgtgaaaaatctccttcacctccgttgcatctgcaagtcatggaattctcttatctctcacgattccgaattcactatgaagcaccttcgcttgt 1114  Q
    ||||| |||||| | |||||||| ||||||||| | |||||||| ||||||||||||||||| || |||||| ||||| | | ||| |||||||| ||||    
T  4183826 ctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgt 4183727  T
Q  1115 caacctccaacctcgaccgccaccacct 1142  Q
    | |||||||||| |||||||||| ||||    
T  4183726 ccacctccaaccacgaccgccacgacct 4183699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 1030 - 1142
Target Start/End: Complemental strand, 4744649 - 4744538
Alignment:
Q  1030 ctccttcacctccgttgcatctgcaagtcatggaattctcttatctctcacgattccgaattcactatgaagcaccttcgcttgtcaacctccaacctcg 1129  Q
    |||||||| ||||||||| | |||||||| || |||||||||||||| || |||||| ||||| | | ||| |||||||| ||||| |||||||||| ||    
T  4744649 ctccttcaactccgttgcgtttgcaagtcctg-aattctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccacg 4744551  T
Q  1130 accgccaccacct 1142  Q
    |||||||| ||||    
T  4744550 accgccacgacct 4744538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 686 - 736
Target Start/End: Original strand, 12591017 - 12591067
Alignment:
Q  686 gtggtggttggggttttaaccccgaaccttccatatattatcaattgtccc 736  Q
    |||||||||||||||| || |||||||||| ||||||||||  ||||||||    
T  12591017 gtggtggttggggtttaaatcccgaaccttgcatatattatgcattgtccc 12591067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 686 - 735
Target Start/End: Original strand, 24623307 - 24623356
Alignment:
Q  686 gtggtggttggggttttaaccccgaaccttccatatattatcaattgtcc 735  Q
    |||||||| ||||||| ||||||||||||| ||||||||||  |||||||    
T  24623307 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgtcc 24623356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 686 - 761
Target Start/End: Original strand, 20565065 - 20565138
Alignment:
Q  686 gtggtggttggggttttaaccccgaaccttccatatattatcaattgtccccctaccaactgatctaagcccacga 761  Q
    |||||||||||||||| ||||||| ||||| ||||||||||  |||||  ||||||||||||| |||||| |||||    
T  20565065 gtggtggttggggtttgaaccccggaccttgcatatattatgcattgt--ccctaccaactgagctaagctcacga 20565138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 686 - 725
Target Start/End: Original strand, 35456810 - 35456849
Alignment:
Q  686 gtggtggttggggttttaaccccgaaccttccatatatta 725  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  35456810 gtggtggttggggtttgaaccccgaaccttgcatatatta 35456849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 686 - 734
Target Start/End: Complemental strand, 4077760 - 4077712
Alignment:
Q  686 gtggtggttggggttttaaccccgaaccttccatatattatcaattgtc 734  Q
    ||||| |||||||||| ||||||||||||| |||||||||| |||||||    
T  4077760 gtggtagttggggtttgaaccccgaaccttgcatatattatgaattgtc 4077712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 687 - 748
Target Start/End: Complemental strand, 26799254 - 26799195
Alignment:
Q  687 tggtggttggggttttaaccccgaaccttccatatattatcaattgtccccctaccaactga 748  Q
    ||||||| ||||||||||||||||||||| ||||| ||||  |||||  |||||||||||||    
T  26799254 tggtggtcggggttttaaccccgaaccttgcatattttatgcattgt--ccctaccaactga 26799195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 687 - 735
Target Start/End: Complemental strand, 39779094 - 39779046
Alignment:
Q  687 tggtggttggggttttaaccccgaaccttccatatattatcaattgtcc 735  Q
    ||||||||||||||| ||||||||||||| ||||||||||  |||||||    
T  39779094 tggtggttggggtttgaaccccgaaccttgcatatattatgcattgtcc 39779046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 686 - 735
Target Start/End: Original strand, 28435238 - 28435287
Alignment:
Q  686 gtggtggttggggttttaaccccgaaccttccatatattatcaattgtcc 735  Q
    ||||||| |||||||| ||||||||||||| ||||||||||  |||||||    
T  28435238 gtggtggctggggtttgaaccccgaaccttgcatatattatgcattgtcc 28435287  T

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