View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14453_low_3 (Length: 349)
Name: NF14453_low_3
Description: NF14453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14453_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 26123697 - 26123879
Alignment:
| Q |
168 |
ttttctcaaagaagtaaaaatggaaagggaatatatcaatttttgacttgtacaatattgcaagagttgtgtgaattgttaannnnnnnnnnnnacttca |
267 |
Q |
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| T |
26123697 |
ttttctcaaaaaaataaaaatggaaagggaatatatcaatttttgtcttgtacaatattgcaagagttgtgtgaattgttaa-ttttttttttaacttca |
26123795 |
T |
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| Q |
268 |
ataattttcgaaatgttggaaattagagtattaggt--tataaaccctgtcaattgggctaacattattctttttgggtaattc |
349 |
Q |
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| T |
26123796 |
ttaatttccgaaatgttggaaattagagtattaggttatataaatcctgtcaattgggctaacattattctttttgggtaattc |
26123879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 26123543 - 26123618
Alignment:
| Q |
14 |
gaataaatagttgtttttgtaaataaaaaattgcgaattgctaagtaagcaaataattttgaattgctacttatta |
89 |
Q |
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| T |
26123543 |
gaataaatagttgtttttgtaaataaaaaattgtgaattgctaagtaagcaaatagttttgaattgctacttatta |
26123618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 26133025 - 26133070
Alignment:
| Q |
295 |
gtattaggttataaaccctgtcaattgggctaacattattcttttt |
340 |
Q |
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| T |
26133025 |
gtattaggttatagaccctatcaattgggctaacattttccttttt |
26133070 |
T |
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