View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14453_low_4 (Length: 294)
Name: NF14453_low_4
Description: NF14453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14453_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 52730165 - 52729890
Alignment:
| Q |
1 |
tcacatttgaaaaaataacttaacttgatatgggggaaaaaacagtttatatctttaaatccagttttaaatttaggaatggtaaatgaggtgtatatct |
100 |
Q |
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| T |
52730165 |
tcacatttgaaaaaataacttaacttgatatgggg-aaaaaacagttgatatctttaaatccagttttaaatt-aggaatggtaaatgaggtgtatatct |
52730068 |
T |
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| Q |
101 |
ttggtatgataactaatttaattataattgtatctggaacgttgttccttgcgtccatgttaatgagactcgcttttattgtaggatatatacatttagg |
200 |
Q |
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| T |
52730067 |
ttggtatgataactaatttaattataattgtatctggaacgttgttccttacgtccatgttaatgagactcgtttttattgtaggatatatacatttagg |
52729968 |
T |
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| Q |
201 |
--gtaattgattgttcaactctttaactttataaatttcggacaatctcaagttacatatccaaatcatttttattga |
276 |
Q |
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| T |
52729967 |
gtgtaattgattgttcaactctttaacttcataaatttcggacaatctcaagttacatatccaaatcatttttattga |
52729890 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 44552167 - 44552240
Alignment:
| Q |
198 |
agggtaattgattgttcaactctttaactttataaatttcggacaatctcaagttacatatccaaatcattttt |
271 |
Q |
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|||||||||| ||||||||||| |||||| | |||| || |||||||||||||||||||||||| ||| |||| |
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| T |
44552167 |
agggtaattggttgttcaactcattaactaaagaaatctcagacaatctcaagttacatatccaagtcactttt |
44552240 |
T |
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