View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14453_low_7 (Length: 260)
Name: NF14453_low_7
Description: NF14453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14453_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 30411829 - 30411587
Alignment:
| Q |
1 |
cgtgtaaatataatttacttgtgtggttgaaattattattatttttcttaattaatagtctttatttaatacgtgtgaaatgactatatttatgtatgtt |
100 |
Q |
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| T |
30411829 |
cgtgtaaatataatttacttgtgtggttgaaattattattatttttcttaatttatagtctttatttaatacgtgcgaaatgactatatttatgtatgtt |
30411730 |
T |
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| Q |
101 |
ttgaggtgccatgttgtgtgtgttgtatggagtgaaatagagatttacatttgctgaataagcttcaaattttcagtttcattggtttcagctccactcc |
200 |
Q |
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| T |
30411729 |
ttgaggtgccatgttgtgtgtgttgtatggagtgaaatagagatttaca-ttgcagaataagcttcaaatttccagtttcattggtttcagctccactcc |
30411631 |
T |
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| Q |
201 |
tatggagctttggagctgaacctcaccatcaacattgacataac |
244 |
Q |
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| T |
30411630 |
tatggagctttggagctgaacctcaccatcaacattgacataac |
30411587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 30399358 - 30399306
Alignment:
| Q |
157 |
aataagcttcaaattttcagtttcattggtttcagctccactcctatggagct |
209 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| || ||||||| |
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| T |
30399358 |
aataagcttcaaatttttcgtttcattcgtttcagctccacttctctggagct |
30399306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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