View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14454_high_2 (Length: 474)
Name: NF14454_high_2
Description: NF14454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14454_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 159 - 463
Target Start/End: Original strand, 13354988 - 13355292
Alignment:
| Q |
159 |
ctgactttattgttgccgtactctatttttgttttgttgtacaaatagggggaaactgtggatgctatatgtttccctctattttcatccctttacaaaa |
258 |
Q |
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| T |
13354988 |
ctgactttattgttgccgtactctatttttgttttgttgtacaaatagggggaaactgttgatgctatatgtttccctctattttcatccctttacaaaa |
13355087 |
T |
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| Q |
259 |
tgtcttttaagggtgatgatagtttatttttgtaatagttcgacatggttaatgtttcttgagagtgaaaaacattttccttctttacatgttagctaaa |
358 |
Q |
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| T |
13355088 |
tgtcttttaagggtgatgatagtttatttttgtaatagttcgacatggttaatgtttcttgagagtgaaaaacattttccttctttacatgttagctaaa |
13355187 |
T |
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| Q |
359 |
tttgaaatttacatcaaatttgcaaatgcaacatcatgtatgtattgcaaaagcatttcttgcaggttacacgaccaaaacaaatatatgaaatattatt |
458 |
Q |
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| T |
13355188 |
tttgaaatttacatcaaatttgcaaatgcaacatcatgtatgtattgcaaaagcatttcttgcaggttacacgaccaaaacaaatatatgaaatattact |
13355287 |
T |
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| Q |
459 |
ttctt |
463 |
Q |
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| T |
13355288 |
ttctt |
13355292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 13354932 - 13354991
Alignment:
| Q |
19 |
aagttcttgtttacatgcaaatctttttcaggaagcaaaactcttgaagttagaagctga |
78 |
Q |
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| T |
13354932 |
aagtttttgtttacatgcaaatctttttcaggaagcaaaactcttgaagttagaagctga |
13354991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 13381980 - 13381842
Alignment:
| Q |
19 |
aagttcttgtttacatgcaaatctttttcaggaagcaaaactcttgaagttagaagctgaaattgcagtttcataatttgaatggccaaactacaacaga |
118 |
Q |
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| T |
13381980 |
aagttcttgttttcttgcaaatctttattggaaagtaaaactgt-gaagatataagatgaatttgcagtttcataatttgaatgaccaaactatgacaga |
13381882 |
T |
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| Q |
119 |
tagttttggtcacatattaatcaatactaggaaaaagggt |
158 |
Q |
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| T |
13381881 |
tagtttttgccacataatgatcagtactaggaaaaagggt |
13381842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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