View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14454_high_5 (Length: 234)

Name: NF14454_high_5
Description: NF14454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14454_high_5
NF14454_high_5
[»] chr6 (14 HSPs)
chr6 (13-234)||(32683060-32683281)
chr6 (142-225)||(33011031-33011114)
chr6 (164-234)||(32684916-32684991)
chr6 (135-221)||(28711057-28711143)
chr6 (135-203)||(34168335-34168403)
chr6 (151-188)||(34119068-34119105)
chr6 (151-188)||(34146227-34146264)
chr6 (135-188)||(34147597-34147650)
chr6 (151-188)||(34158843-34158880)
chr6 (135-188)||(34160213-34160266)
chr6 (135-198)||(34114557-34114620)
chr6 (135-185)||(34135834-34135884)
chr6 (135-188)||(34106743-34106796)
chr6 (135-188)||(34109590-34109643)
[»] chr4 (1 HSPs)
chr4 (135-203)||(38648609-38648677)
[»] scaffold1113 (1 HSPs)
scaffold1113 (145-206)||(1795-1860)
[»] scaffold0961 (1 HSPs)
scaffold0961 (145-206)||(1757-1822)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 32683060 - 32683281
Alignment:
Q  13 atttatctctatatcaccagcagaaattcaagcctaaaattactattgctcatattgaaaagctcgtgagaactgccaagactgtgtctgatttacaacc 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32683060 atttatctctatatcaccagcagaaattgaagcctaaaattactattgctcatattgaaaagctcgtgagaactgcgaagactgtgtctgatttacaacc 32683159  T
Q  113 tgcggcaagttctttaaattttagtttcatacttttagtttctttgtttatatttgagttctttaatattaattaacctataaaccagcagttggagttg 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32683160 tgcggcaagttctttaaatttaagtttcatacttttagtttctttgtttatatttgagttctttaatattaattaacctataaaccagcagttggagttg 32683259  T
Q  213 ttgaatgcagcgcgtactgccc 234  Q
    ||||||||||||||||||||||    
T  32683260 ttgaatgcagcgcgtactgccc 32683281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 33011114 - 33011031
Alignment:
Q  142 tacttttagtttctttgtttatatttgagttctttaatattaattaacctataaaccagcagttggagttgttgaatgcagcgc 225  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||    
T  33011114 tacttttagtttctttgttaatatttgagttctttaatattaattaacctataaaccagcagttgaagttggcgaatgcagcgc 33011031  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 32684916 - 32684991
Alignment:
Q  164 atttgagttctttaatattaattaacctataaaccagcag-----ttggagttgttgaatgcagcgcgtactgccc 234  Q
    ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||    
T  32684916 atttgagttctttaatattaattaacctataaaccagcagttggattggagttgttgaatgcagcgcggactgccc 32684991  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 28711057 - 28711143
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaattaacctataaaccagcagttggagttgttgaatgca 221  Q
    ||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||| || |||||    
T  28711057 agtttcacacttctagtttccttgttcatatttgagttctttaatattaattaacctctaaacctgcagttgaagttggtggatgca 28711143  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 34168335 - 34168403
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaattaacctataaaccagcag 203  Q
    ||||||| | |||||||||||||||| ||||||||| |||||| ||||||||||||| ||||| |||||    
T  34168335 agtttcacaattttagtttctttgttcatatttgagctctttattattaattaacctctaaactagcag 34168403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 34119068 - 34119105
Alignment:
Q  151 tttctttgtttatatttgagttctttaatattaattaa 188  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34119068 tttctttgttcatatttgagttctttaatattaattaa 34119105  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 34146227 - 34146264
Alignment:
Q  151 tttctttgtttatatttgagttctttaatattaattaa 188  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34146227 tttctttgttcatatttgagttctttaatattaattaa 34146264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 34147597 - 34147650
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaattaa 188  Q
    ||||||| | |||||||||| ||||| | |||||||||||||||||||||||||    
T  34147597 agtttcacaattttagtttccttgttcacatttgagttctttaatattaattaa 34147650  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 34158843 - 34158880
Alignment:
Q  151 tttctttgtttatatttgagttctttaatattaattaa 188  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34158843 tttctttgttcatatttgagttctttaatattaattaa 34158880  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 34160213 - 34160266
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaattaa 188  Q
    ||||||| | |||||||||| ||||| | |||||||||||||||||||||||||    
T  34160213 agtttcacaattttagtttccttgttcacatttgagttctttaatattaattaa 34160266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 34114557 - 34114620
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaattaacctataaacc 198  Q
    ||||||| | |||||||||||||||| ||| ||||||| || ||||||||||||| | ||||||    
T  34114557 agtttcacaattttagtttctttgttcatagttgagtttttaaatattaattaacttctaaacc 34114620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 34135884 - 34135834
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaat 185  Q
    ||||||| | |||||||||||||   |||||||||||||||||||||||||    
T  34135884 agtttcacaattttagtttctttccgtatatttgagttctttaatattaat 34135834  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 34106743 - 34106796
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaattaa 188  Q
    ||||||| | |||||||||| ||||| ||||||||||| | |||||||||||||    
T  34106743 agtttcagaattttagtttccttgttcatatttgagttatgtaatattaattaa 34106796  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 34109590 - 34109643
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaattaa 188  Q
    ||||||| | |||||| ||| ||||| ||||||||||| |||||||||||||||    
T  34109590 agtttcacaattttagcttccttgttcatatttgagttatttaatattaattaa 34109643  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 38648677 - 38648609
Alignment:
Q  135 agtttcatacttttagtttctttgtttatatttgagttctttaatattaattaacctataaaccagcag 203  Q
    ||||||| | |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  38648677 agtttcacaattttagtttctttgttcatatttgaattctttaatattaattaatctataaaccagcag 38648609  T

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Target: scaffold1113 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 1860 - 1795
Alignment:
Q  145 ttttagtttctttgtttatatttgagttctttaat----attaattaacctataaaccagcagttg 206  Q
    |||||||||||||||| ||||||||||||||||||    |||||||| ||| ||||||||||||||    
T  1860 ttttagtttctttgttcatatttgagttctttaatgttaattaattatcctctaaaccagcagttg 1795  T

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Target: scaffold0961 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 1757 - 1822
Alignment:
Q  145 ttttagtttctttgtttatatttgagttctttaat----attaattaacctataaaccagcagttg 206  Q
    |||||||||||||||| ||||||||||||||||||    |||||||| ||| ||||||||||||||    
T  1757 ttttagtttctttgttcatatttgagttctttaatgttaattaattatcctctaaaccagcagttg 1822  T

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