View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14454_low_1 (Length: 605)

Name: NF14454_low_1
Description: NF14454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14454_low_1
NF14454_low_1
[»] chr4 (22 HSPs)
chr4 (12-581)||(28258858-28259424)
chr4 (9-51)||(26781-26823)
chr4 (9-51)||(42403939-42403981)
chr4 (9-51)||(25571371-25571413)
chr4 (9-51)||(54426155-54426197)
chr4 (6-51)||(38478824-38478869)
chr4 (11-51)||(27043748-27043788)
chr4 (19-63)||(47970396-47970440)
chr4 (13-56)||(32831438-32831481)
chr4 (9-60)||(52333701-52333752)
chr4 (9-51)||(17822781-17822823)
chr4 (9-51)||(21731572-21731614)
chr4 (14-60)||(22845627-22845672)
chr4 (12-62)||(25717694-25717744)
chr4 (14-60)||(29376006-29376052)
chr4 (9-51)||(44797992-44798034)
chr4 (14-63)||(1075558-1075607)
chr4 (10-51)||(55437188-55437229)
chr4 (11-51)||(8705053-8705093)
chr4 (9-37)||(18815149-18815177)
chr4 (12-56)||(29126182-29126226)
chr4 (11-39)||(35571549-35571577)
[»] chr8 (21 HSPs)
chr8 (9-51)||(30251370-30251412)
chr8 (8-60)||(43043771-43043823)
chr8 (12-50)||(10488576-10488614)
chr8 (9-51)||(38602439-38602481)
chr8 (12-60)||(2487927-2487975)
chr8 (13-60)||(4560605-4560652)
chr8 (11-58)||(32976478-32976525)
chr8 (9-51)||(43717850-43717892)
chr8 (10-63)||(5349503-5349556)
chr8 (11-48)||(10062059-10062096)
chr8 (14-47)||(11183659-11183692)
chr8 (10-51)||(15180651-15180692)
chr8 (10-63)||(26479885-26479938)
chr8 (11-56)||(35928648-35928693)
chr8 (9-58)||(41475028-41475077)
chr8 (8-60)||(8535970-8536022)
chr8 (12-60)||(18331817-18331865)
chr8 (11-51)||(36963272-36963312)
chr8 (8-52)||(43045640-43045684)
chr8 (8-60)||(44236738-44236790)
chr8 (12-44)||(44792775-44792807)
[»] chr2 (31 HSPs)
chr2 (14-60)||(40158821-40158867)
chr2 (12-60)||(22878201-22878249)
chr2 (9-60)||(40759263-40759314)
chr2 (9-51)||(7928214-7928256)
chr2 (9-51)||(15305786-15305828)
chr2 (9-51)||(25790236-25790278)
chr2 (12-50)||(40837356-40837394)
chr2 (19-60)||(25609899-25609940)
chr2 (12-56)||(4350797-4350841)
chr2 (10-50)||(26143559-26143599)
chr2 (11-51)||(30990357-30990397)
chr2 (8-60)||(40400815-40400867)
chr2 (12-51)||(3312189-3312228)
chr2 (9-60)||(9996841-9996892)
chr2 (9-60)||(15370239-15370290)
chr2 (11-50)||(26281807-26281846)
chr2 (8-51)||(27317491-27317534)
chr2 (8-51)||(39659424-39659467)
chr2 (12-63)||(40944013-40944064)
chr2 (9-59)||(1830143-1830193)
chr2 (9-39)||(4607049-4607079)
chr2 (9-51)||(31744410-31744452)
chr2 (10-60)||(41170713-41170763)
chr2 (11-60)||(33942009-33942058)
chr2 (11-59)||(8017538-8017586)
chr2 (11-51)||(18179061-18179101)
chr2 (8-60)||(26548556-26548608)
chr2 (9-49)||(27237782-27237822)
chr2 (9-57)||(31096408-31096456)
chr2 (12-48)||(33197180-33197216)
chr2 (12-60)||(43259938-43259986)
[»] chr3 (22 HSPs)
chr3 (14-63)||(24158437-24158486)
chr3 (8-51)||(20170629-20170672)
chr3 (9-60)||(22667506-22667557)
chr3 (9-60)||(22724145-22724196)
chr3 (8-44)||(47132435-47132471)
chr3 (12-51)||(1288768-1288807)
chr3 (9-60)||(26990770-26990821)
chr3 (9-39)||(1820048-1820078)
chr3 (10-60)||(41164907-41164957)
chr3 (10-51)||(16072958-16072999)
chr3 (14-51)||(18405752-18405789)
chr3 (11-60)||(25459548-25459597)
chr3 (12-49)||(26990144-26990181)
chr3 (18-63)||(27795938-27795983)
chr3 (11-52)||(36507010-36507051)
chr3 (9-49)||(42799882-42799923)
chr3 (11-44)||(43062792-43062825)
chr3 (10-63)||(44237517-44237570)
chr3 (12-60)||(21872214-21872262)
chr3 (11-51)||(25447163-25447203)
chr3 (11-51)||(26878312-26878352)
chr3 (11-39)||(32663762-32663790)
[»] chr7 (11 HSPs)
chr7 (12-60)||(33894730-33894778)
chr7 (12-51)||(11619077-11619116)
chr7 (11-60)||(29363611-29363660)
chr7 (9-39)||(5947365-5947395)
chr7 (14-63)||(3836604-3836653)
chr7 (10-51)||(19302480-19302521)
chr7 (8-60)||(389941-389993)
chr7 (12-56)||(1418526-1418570)
chr7 (8-44)||(3610655-3610691)
chr7 (6-50)||(30812251-30812295)
chr7 (15-63)||(32410640-32410688)
[»] chr5 (19 HSPs)
chr5 (9-60)||(17258798-17258850)
chr5 (12-63)||(14714762-14714813)
chr5 (14-60)||(10771809-10771855)
chr5 (11-57)||(42646996-42647042)
chr5 (9-60)||(7550434-7550485)
chr5 (9-56)||(12930679-12930726)
chr5 (9-60)||(38104773-38104824)
chr5 (9-60)||(41535020-41535071)
chr5 (9-56)||(42034167-42034214)
chr5 (12-58)||(5377116-5377162)
chr5 (9-51)||(10640065-10640107)
chr5 (9-51)||(15246945-15246987)
chr5 (10-60)||(17369306-17369356)
chr5 (10-60)||(32194009-32194059)
chr5 (10-39)||(16937800-16937829)
chr5 (8-65)||(17368770-17368827)
chr5 (14-50)||(11615575-11615611)
chr5 (11-51)||(14331478-14331518)
chr5 (12-60)||(36796626-36796674)
[»] chr1 (17 HSPs)
chr1 (12-60)||(21002258-21002306)
chr1 (12-51)||(41505786-41505825)
chr1 (9-51)||(2295303-2295345)
chr1 (12-56)||(6292599-6292643)
chr1 (9-60)||(10199324-10199375)
chr1 (9-44)||(14576570-14576605)
chr1 (9-60)||(24460317-24460368)
chr1 (18-57)||(28837278-28837317)
chr1 (9-51)||(2295208-2295250)
chr1 (9-51)||(14385709-14385751)
chr1 (14-56)||(18327067-18327109)
chr1 (14-51)||(22416832-22416869)
chr1 (11-60)||(32958740-32958789)
chr1 (20-61)||(36602895-36602936)
chr1 (14-50)||(1432628-1432664)
chr1 (3-39)||(15942657-15942693)
chr1 (11-39)||(34952326-34952354)
[»] chr6 (12 HSPs)
chr6 (10-45)||(34430832-34430867)
chr6 (11-57)||(33068520-33068566)
chr6 (9-51)||(35069528-35069570)
chr6 (9-58)||(2457046-2457095)
chr6 (11-51)||(31624372-31624412)
chr6 (12-51)||(4163265-4163304)
chr6 (12-51)||(4224886-4224925)
chr6 (12-51)||(4308889-4308928)
chr6 (11-51)||(21405072-21405112)
chr6 (12-60)||(33080497-33080545)
chr6 (11-51)||(34404644-34404684)
chr6 (9-37)||(35070570-35070598)
[»] scaffold0020 (1 HSPs)
scaffold0020 (9-63)||(159889-159943)


Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 12 - 581
Target Start/End: Complemental strand, 28259424 - 28258858
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaaccgtatgaaaatgctaacctaattgaataagactatggatgcaaatcat 111  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28259424 tgtttggactgacttatttgagcttatcaactgacataagcacttgtgaaaccgtatgaaaatgctaacctaattgaataagactatggatgcaaatcat 28259325  T
Q  112 aagaaaaacgaatctataacacttttataagttcaaaattgaataatgcggaagctgcaaatatcataggtttaagtgacaaattgaaaaaataattgtt 211  Q
    |||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28259324 aagaaaaacgaatctatatcacttttataagttcaaaattgaat---gcggaagctgcaaatatcataggtttaagtgacaaattgaaaaaataattgtt 28259228  T
Q  212 gtatgataatgcaaaatatgcaataggaaatgaaagagataataaatgaagtaatctagcgatttgaaagaggaacaaagataatttgattaaataaacg 311  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  28259227 gtacgataatgcaaaatatgcaataggaaatgaaagagataacaaatgaagtaatctagcaatttgaaagaggaacgaagataatttgattaaataaacg 28259128  T
Q  312 aaattactgcaattcaattcttatacaggaaaatggaatgaagaaacgaagaggagaaagaagagttaaccagaatcgaagaagcgcgtgagggagagaa 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28259127 aaattactgcaattcaattcttatacaggaaaatggaatgaagaaacgaagaggggaaagaagagttaaccagaatcgaagaagcgcgtgagggagagaa 28259028  T
Q  412 gtacgcacgcgctctgctatgttctcttcttctccgatgaatggatagatctgtgatttatcgctccgtctgcagtatccccctcctcgctaatttctct 511  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28259027 gtacgcacgcgctctgctatgttctcttcttctccgatgaatagatagatctgtgatttatcgctccgtctgcagtatccccctcctcgctaatttctct 28258928  T
Q  512 tcattttaatttattcgcgttcctttttatttcgcctatagcaaacagcttatccctacggccattctcc 581  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28258927 tcgttttaatttattcgcgttcctttttatttcgcctatagcaaacagcttatccctacggccattctcc 28258858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 26781 - 26823
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  26781 gcctgtttggattggcttatttgagcttatcaactggcataag 26823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 42403939 - 42403981
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  42403939 gcctgtttggattgacttatttgagcttatcaactgacataag 42403981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 25571413 - 25571371
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  25571413 gcctgtttggattggcttatttgagtttatctactgacataag 25571371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 54426197 - 54426155
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  54426197 gcctgtttggattggcttatttgagcttatctactggcataag 54426155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 38478869 - 38478824
Alignment:
Q  6 atagcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||    
T  38478869 atagcctgtttggattggcttatttgagcatatctactggcataag 38478824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 27043748 - 27043788
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  27043748 ctgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 47970440 - 47970396
Alignment:
Q  19 attggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||    
T  47970440 attggtttatttgagcttatctactgacataagcacttgtgaaac 47970396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 32831438 - 32831481
Alignment:
Q  13 gtttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||    
T  32831438 gtttggattggctcatttgagcttatctactgacataagcactt 32831481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 52333752 - 52333701
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||| |||||||||||||||||||||  |||||| |||| ||||||||    
T  52333752 gcctgtttcgattggcttatttgagcttatttactgacctaagcacttgtga 52333701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 17822781 - 17822823
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||  |||||||||||||||| |||||||||||    
T  17822781 gcctgtttggattaacttatttgagcttatctactgacataag 17822823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 21731572 - 21731614
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||| |||||||||| |||| |||||||||||    
T  21731572 gcctgtttggattggtttatttgagcatatctactgacataag 21731614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 22845627 - 22845672
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  22845627 tttggattggcttatttgagcttatctact-acataagtacttgtga 22845672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 25717744 - 25717694
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaa 62  Q
    ||||||||||| |||||||||||||||  || |||||||| ||||||||||    
T  25717744 tgtttggattgtcttatttgagcttatgtaccgacataagcacttgtgaaa 25717694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 29376052 - 29376006
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||||||| |||||| | ||||||||| ||||||||    
T  29376052 tttggattggcttatttgaacttatctattgacataagcacttgtga 29376006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 44798034 - 44797992
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||| |||| |||||||| |||||||||||    
T  44798034 gcctgtttggattggctgatttaagcttatctactgacataag 44797992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 1075607 - 1075558
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    |||| ||||||||||||||||||||| |||| |||||  |||||||||||    
T  1075607 tttgaattggcttatttgagcttatctactggcataaacacttgtgaaac 1075558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 55437229 - 55437188
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||| ||||| |||| ||||||    
T  55437229 cctgtttggattggcttatttgagtttatctactgccataag 55437188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 8705093 - 8705053
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||| ||||||||||||| | |||||||||    
T  8705093 ctgtttggattggctcatttgagcttatctattgacataag 8705053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 18815177 - 18815149
Alignment:
Q  9 gcctgtttggattggcttatttgagctta 37  Q
    |||||||||||||||||||||||||||||    
T  18815177 gcctgtttggattggcttatttgagctta 18815149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 29126182 - 29126226
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    |||||||||||||||||||||||||||| || | |||||| ||||    
T  29126182 tgtttggattggcttatttgagcttatctaccggcataagcactt 29126226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 35571549 - 35571577
Alignment:
Q  11 ctgtttggattggcttatttgagcttatc 39  Q
    |||||||||||||||||||||||||||||    
T  35571549 ctgtttggattggcttatttgagcttatc 35571577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 30251370 - 30251412
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  30251370 gcctgtttggattggcttatttgagcttatctactgacataag 30251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 43043823 - 43043771
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||    
T  43043823 agcctgtttggattgacttgtttgagcttatcaactggcataagcacttgtga 43043771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 10488614 - 10488576
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataa 50  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  10488614 tgtttggattggcttatttgagcttatcaactaacataa 10488576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 38602481 - 38602439
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  38602481 gcctgtttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 2487927 - 2487975
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||||||||||| | ||| ||||||||||| ||||||||    
T  2487927 tgtttggattggcttatttgagttcatctactgacataagcacttgtga 2487975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 4560652 - 4560605
Alignment:
Q  13 gtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||| |||||||||||||||| | ||||||||| ||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtga 4560605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 32976525 - 32976478
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaacttgt 58  Q
    |||||||||||  |||||||||||||||| ||||||||||| ||||||    
T  32976525 ctgtttggattcccttatttgagcttatctactgacataagcacttgt 32976478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 43717850 - 43717892
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||| |||||||||||||||||||||||||| | |||||||||    
T  43717850 gcctatttggattggcttatttgagcttatctattgacataag 43717892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 5349503 - 5349556
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    ||||||||||||| ||||||||||  |||| ||| ||| |||||||||||||||    
T  5349503 cctgtttggattgacttatttgagtatatctactaacacaagaacttgtgaaac 5349556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 10062059 - 10062096
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacat 48  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  10062059 ctgtttggattggcttatttgagcttatctactaacat 10062096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 11183692 - 11183659
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgaca 47  Q
    |||||||||||||||||||||||||| |||||||    
T  11183692 tttggattggcttatttgagcttatctactgaca 11183659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 15180692 - 15180651
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||| ||||| |||| ||||||    
T  15180692 cctgtttggattggcttatttgagtttatctactgccataag 15180651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 26479938 - 26479885
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    ||||||||||||| ||||||| |||||||| | ||||| ||| |||||||||||    
T  26479938 cctgtttggattgacttatttaagcttatctattgacacaaggacttgtgaaac 26479885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 35928648 - 35928693
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    |||||||||||| ||||||| |||||||| ||||||||||| ||||    
T  35928648 ctgtttggattgtcttattttagcttatctactgacataagcactt 35928693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 41475028 - 41475077
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgt 58  Q
    |||||||||||||| |||||||||||||||  | ||||||||| ||||||    
T  41475028 gcctgtttggattgacttatttgagcttattgattgacataagtacttgt 41475077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 8535970 - 8536022
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||| |||||||||||| ||||||  ||||| ||||||||||| ||||||||    
T  8535970 agcctttttggattggctaatttgaatttatctactgacataagtacttgtga 8536022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 18331865 - 18331817
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||| ||||||||| |||||| ||| ||||||| ||||||||    
T  18331865 tgtttggattgacttatttgatcttatctactaacataagcacttgtga 18331817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 36963272 - 36963312
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  36963272 ctgtttggattggcttatttgagctaatctactggcataag 36963312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 43045640 - 43045684
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataaga 52  Q
    ||||||||||||||||||||||| |||||||| |||  |||||||    
T  43045640 agcctgtttggattggcttatttaagcttatctactagcataaga 43045684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 44236738 - 44236790
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||  |||||||||| ||||| |||| |||||| ||||||||    
T  44236738 agcctgtttggattaccttatttgagtttatctactggcataagcacttgtga 44236790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 44792807 - 44792775
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactg 44  Q
    |||||||||||||||||||||||||||| ||||    
T  44792807 tgtttggattggcttatttgagcttatctactg 44792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 40158867 - 40158821
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  40158867 tttggattggcttatttgagcatatctactgacataagaacttgtga 40158821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 22878249 - 22878201
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtga 22878201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 40759314 - 40759263
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||| |||||||||||||||| | ||||||||| ||||||||    
T  40759314 gcctgtttggattgccttatttgagcttatctattgacataagcacttgtga 40759263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 7928214 - 7928256
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  7928214 gcctgtttggattggcttatttgagcttatctattgacataag 7928256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 15305828 - 15305786
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  15305828 gcctgtttggattggcttatttgagcttatctattgacataag 15305786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 25790278 - 25790236
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||| |||||||||||||||||||||||| ||||||||    
T  25790278 gcctgtttgaattggcttatttgagcttatcaacagacataag 25790236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 40837356 - 40837394
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataa 50  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  40837356 tgtttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 25609940 - 25609899
Alignment:
Q  19 attggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  25609940 attggcttatttgagcttatctactaacataagaacttgtga 25609899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 4350841 - 4350797
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    ||||||||||||||||||||||||| || ||||||||||| ||||    
T  4350841 tgtttggattggcttatttgagcttctctactgacataagcactt 4350797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 26143559 - 26143599
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataa 50  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  26143559 cctgtttggattggcttgtttgagcttatctactgacataa 26143599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 30990357 - 30990397
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  30990357 ctgtttggattggcttatttgagcttatctactaacataag 30990397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 40400815 - 40400867
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||  ||||||||    
T  40400815 agcctgtttggattggcttatttaagcctatctactgacataaagacttgtga 40400867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 3312228 - 3312189
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  3312228 tgtttggattggcttatttgagcttatctactgacgtaag 3312189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 9996892 - 9996841
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||| ||| ||||||||||||||||||||  |||||| ||||||||    
T  9996892 gcctgtttggcttgacttatttgagcttatcaactagcataagtacttgtga 9996841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 15370239 - 15370290
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||| |||||||||||||||| |||| |||||| | ||||||    
T  15370239 gcctgtttggattgacttatttgagcttatctactggcataagcatttgtga 15370290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 26281807 - 26281846
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataa 50  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  26281807 ctgttttgattggcttatttgagtttatcaactgacataa 26281846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 27317534 - 27317491
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||| |||||||||||||||| || ||||||||    
T  27317534 agcctgtttggattgacttatttgagcttatctaccgacataag 27317491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 39659424 - 39659467
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  39659424 agcctgtttggattggcttgcttgagcttatctactgacataag 39659467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 40944064 - 40944013
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    |||||||||| ||||||||||| ||||| | ||||||||| |||||||||||    
T  40944064 tgtttggattagcttatttgagtttatctaatgacataagcacttgtgaaac 40944013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 1830193 - 1830143
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtg 59  Q
    |||||||||||||| |||||||||| ||||  ||||||||||| |||||||    
T  1830193 gcctgtttggattgacttatttgagtttatttactgacataagcacttgtg 1830143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 4607079 - 4607049
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatc 39  Q
    |||||||||||||||||||||||||||||||    
T  4607079 gcctgtttggattggcttatttgagcttatc 4607049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 31744452 - 31744410
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||| ||||||| || ||||||||    
T  31744452 gcctgtttggattggcttatttgggcttatctaccgacataag 31744410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 41170763 - 41170713
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||||||||||||| ||||| ||| ||||||  ||||||||    
T  41170763 cctgtttggattggcttatttgagtttatctactaacataaacacttgtga 41170713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 33942058 - 33942009
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||||||||||| ||||| |||| |||||| ||| ||||    
T  33942058 ctgtttggattggcttatttgaggttatctactggcataagtactagtga 33942009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 8017586 - 8017538
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaacttgtg 59  Q
    |||||||||||| |||||||||| ||||| | ||||||||| |||||||    
T  8017586 ctgtttggattgacttatttgaggttatctattgacataagcacttgtg 8017538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 18179101 - 18179061
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||| |||||||||||||||| ||| |||||||    
T  18179101 ctgtttggattgacttatttgagcttatctactaacataag 18179061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 26548608 - 26548556
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||| ||| |||||||||||||||||||||| || |||||||| | ||||||    
T  26548608 agcctcttttgattggcttatttgagcttatctaccgacataagtatttgtga 26548556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 27237782 - 27237822
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacata 49  Q
    ||||||| ||||||||||||||| ||||||| |||||||||    
T  27237782 gcctgttcggattggcttatttgtgcttatctactgacata 27237822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 31096456 - 31096408
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttg 57  Q
    ||||||||  |||||||||||||| |||||| ||||||||||| |||||    
T  31096456 gcctgtttaaattggcttatttgaacttatctactgacataagcacttg 31096408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 33197180 - 33197216
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacat 48  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  33197180 tgtttggattgacttatttgagtttatcaactgacat 33197216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 43259986 - 43259938
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||||||||| |||||| |||  |||||| ||||||||    
T  43259986 tgtttggattggcttatttgaacttatctactagcataagcacttgtga 43259938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 24158437 - 24158486
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  24158437 tttggattggcttatttaagcttatctactgacataagtacttgtgaaac 24158486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 20170629 - 20170672
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  20170629 agcctgtttggattggcttatttgagcttatctagtgacataag 20170672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 22667557 - 22667506
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||| ||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  22667557 gcctatttcgattggcttatttgagcttatctactgacataagcacttgtga 22667506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 22724196 - 22724145
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||| ||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  22724196 gcctatttcgattggcttatttgagcttatctactgacataagcacttgtga 22724145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 47132471 - 47132435
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactg 44  Q
    |||||||||||||||||||||||||||||||| ||||    
T  47132471 agcctgtttggattggcttatttgagcttatctactg 47132435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 1288768 - 1288807
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  1288768 tgtttggattgacttatttgagcttatcaactggcataag 1288807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 26990821 - 26990770
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||||||||||||||| ||  ||||||| ||||| ||||||||    
T  26990821 gcctgtttggattggcttatttgagtttgccaactgatataagcacttgtga 26990770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 1820048 - 1820078
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatc 39  Q
    |||||||||||||||||||||||||||||||    
T  1820048 gcctgtttggattggcttatttgagcttatc 1820078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 41164907 - 41164957
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||| |||||||||| |||||| || | |||||||||||||||    
T  41164907 cctgtttggattagcttatttgaacttatctaccggcataagaacttgtga 41164957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 16072958 - 16072999
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||| |||||||||||||||| | |||||||||    
T  16072958 cctgtttggattgacttatttgagcttatctaatgacataag 16072999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 18405752 - 18405789
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataag 18405789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 25459548 - 25459597
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||  |||||||||||||||||||  |||||| ||||||||    
T  25459548 ctgtttggattgatttatttgagcttatcaactagcataagcacttgtga 25459597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 26990144 - 26990181
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacata 49  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  26990144 tgtttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 27795938 - 27795983
Alignment:
Q  18 gattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    |||| ||||||||||||||||| |||| |||||| |||||||||||    
T  27795938 gattagcttatttgagcttatctactggcataagcacttgtgaaac 27795983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 36507010 - 36507051
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataaga 52  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||    
T  36507010 ctgtttggattggcttatttgagtttatctactgatataaga 36507051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 42799882 - 42799923
Alignment:
Q  9 gcctgtttggattggcttatttgagc-ttatcaactgacata 49  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  42799882 gcctgtttggattggcttatttgagctttatctactgacata 42799923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 43062825 - 43062792
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactg 44  Q
    |||||||||||||||||||||||| |||||||||    
T  43062825 ctgtttggattggcttatttgagcatatcaactg 43062792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 44237570 - 44237517
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    |||||||  ||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  44237570 cctgtttaaattggtttatttgagtttatctactgacataagcacttgtgaaac 44237517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 21872214 - 21872262
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||  ||||||||| |||||| ||||||||||| ||||||||    
T  21872214 tgtttggattaacttatttgatcttatctactgacataagcacttgtga 21872262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 25447163 - 25447203
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||| |||||||||| ||||| |||||||||||    
T  25447163 ctgtttggattgacttatttgagtttatctactgacataag 25447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 26878352 - 26878312
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||| ||||||||||| ||||||||| |||||||||||    
T  26878352 ctgtttgaattggcttattcgagcttatctactgacataag 26878312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 32663790 - 32663762
Alignment:
Q  11 ctgtttggattggcttatttgagcttatc 39  Q
    |||||||||||||||||||||||||||||    
T  32663790 ctgtttggattggcttatttgagcttatc 32663762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 33894778 - 33894730
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  33894778 tgtttggattagcttatttgagcttatcaaatgacataagcacttgtga 33894730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 11619077 - 11619116
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  11619077 tgtttggattggcttatttgagcttatctactgacataag 11619116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 29363660 - 29363611
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||||||||||| |||||| ||| ||||||| ||||||||    
T  29363660 ctgtttggattggcttatttgaacttatctactaacataagcacttgtga 29363611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 5947395 - 5947365
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatc 39  Q
    |||||||||||||||||||||||||||||||    
T  5947395 gcctgtttggattggcttatttgagcttatc 5947365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 3836604 - 3836653
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    ||||||||| |||||||||||||||| |||| | |||| |||||||||||    
T  3836604 tttggattgccttatttgagcttatctactggcttaagcacttgtgaaac 3836653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 19302480 - 19302521
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||| |||| |||||||||||||||| |||||||||||    
T  19302480 cctgtttgaattgacttatttgagcttatctactgacataag 19302521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 389993 - 389941
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||| ||||||||||||||||||||| |||| |||  |||||| ||||||||    
T  389993 agcctatttggattggcttatttgagcctatctacttccataagtacttgtga 389941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 1418570 - 1418526
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    ||||||||||| |||||||||||||||| |||| |||||| ||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcactt 1418526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 3610655 - 3610691
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactg 44  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  3610655 agcctgtttgaattggcttatttgagcttatctactg 3610691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 30812295 - 30812251
Alignment:
Q  6 atagcctgtttggattggcttatttgagcttatcaactgacataa 50  Q
    ||||||||||||||||| |||||||||| ||| | ||||||||||    
T  30812295 atagcctgtttggattgacttatttgagtttacctactgacataa 30812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 32410688 - 32410640
Alignment:
Q  15 ttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    ||||||||||||||||||||||||| | || |||||| | |||||||||    
T  32410688 ttggattggcttatttgagcttatctattggcataagcatttgtgaaac 32410640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 17258798 - 17258850
Alignment:
Q  9 gcctgtttggatt-ggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  17258798 gcctgtttggatttggcttatttgagcttatcaactaacataagcacttgtga 17258850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 14714762 - 14714813
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    |||||| ||||||| ||||||||||||| ||||||||||| |||||||||||    
T  14714762 tgtttgaattggctcatttgagcttatccactgacataagcacttgtgaaac 14714813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 10771809 - 10771855
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||    
T  10771809 tttggattggcttatttgagcttatctactggcataagcacttgtga 10771855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 42647042 - 42646996
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaacttg 57  Q
    ||||||||||||||||||||||||||||| |||||||| || |||||    
T  42647042 ctgtttggattggcttatttgagcttatctactgacattagcacttg 42646996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 7550434 - 7550485
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||| |||||| ||||||||||||||| ||||||||||  ||||||||    
T  7550434 gcctgttttgattggtttatttgagcttatccactgacataattacttgtga 7550485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 12930726 - 12930679
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    ||||||||||||| ||||||||||| | ||||||||||||||| ||||    
T  12930726 gcctgtttggattagcttatttgagttcatcaactgacataagcactt 12930679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 38104773 - 38104824
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||| |||||||| |||||||||||||| ||| | ||||||||    
T  38104773 gcctgtttggatttgcttatttaagcttatcaactgatataggcacttgtga 38104824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 41535020 - 41535071
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||| ||||||||||||||||| ||| |||| |||||| ||||||||    
T  41535020 gcctgtttgaattggcttatttgagctcatctactgccataagcacttgtga 41535071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 42034214 - 42034167
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    ||||||||||||| ||||||||||||||| | ||||||||||| ||||    
T  42034214 gcctgtttggattagcttatttgagcttacctactgacataagcactt 42034167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 5377116 - 5377162
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgt 58  Q
    |||| ||||||||||||||||||||||| | ||||||||| ||||||    
T  5377116 tgttcggattggcttatttgagcttatctattgacataagcacttgt 5377162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 10640107 - 10640065
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  10640107 gcctgtttggattagcttatttgagtttatctactgacataag 10640065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 15246987 - 15246945
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||| | ||||||||||||||| |||||||||||    
T  15246987 gcctgtttggatttgtttatttgagcttatctactgacataag 15246945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 17369356 - 17369306
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||| ||||||||| |||||| ||||||||||  ||||||||    
T  17369356 cctgtttggattgacttatttgaacttatctactgacataatcacttgtga 17369306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 32194009 - 32194059
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||||| |||||||||||||| | | ||| ||||||||||||||    
T  32194009 cctgtttggattgacttatttgagcttaactaatgatataagaacttgtga 32194059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 16937800 - 16937829
Alignment:
Q  10 cctgtttggattggcttatttgagcttatc 39  Q
    ||||||||||||||||||||||||||||||    
T  16937800 cctgtttggattggcttatttgagcttatc 16937829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 17368827 - 17368770
Alignment:
Q  8 agcctgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaaccg 65  Q
    ||||||||||||||| ||||||| | |||||| |||| |||||| |||||||| ||||    
T  17368827 agcctgtttggattgacttatttaaacttatctactggcataagcacttgtgacaccg 17368770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 11615575 - 11615611
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataa 50  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  11615575 tttggattggcttatttgagcttatctactaacataa 11615611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 14331518 - 14331478
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||| |||||||||||||||| |||| ||||||    
T  14331518 ctgtttggattgacttatttgagcttatctactgtcataag 14331478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 36796626 - 36796674
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||||| |||||||||||||||| | ||||||||  ||||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatgacataaacacttgtga 36796674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 21002306 - 21002258
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||    
T  21002306 tgtttggattggcttatttgagcttatctacttgcataagaacttgtga 21002258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 41505825 - 41505786
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  41505825 tgtttggattggcttatttgagcttatctactgacataag 41505786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 2295345 - 2295303
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||||||||| |||||| ||||    
T  2295345 gcctgtttggattggcttatttgagcttatctactgacttaag 2295303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 6292643 - 6292599
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcactt 6292599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 10199324 - 10199375
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||| |||||||| |||||||||||||||| ||| ||||||| ||||||||    
T  10199324 gcctggttggattgacttatttgagcttatctactaacataagcacttgtga 10199375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 14576570 - 14576605
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactg 44  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14576570 gcctgtttggattggcttatttgagcttatctactg 14576605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 24460317 - 24460368
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||||||||||| ||||||||| |||||| |||||||| || ||||||||    
T  24460317 gcctgtttggattgacttatttgaacttatctactgacatgagcacttgtga 24460368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 28837278 - 28837317
Alignment:
Q  18 gattggcttatttgagcttatcaactgacataagaacttg 57  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  28837278 gattggcttatttgagcttatctactgacataagcacttg 28837317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 2295250 - 2295208
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||    
T  2295250 gcctgtttgaattggcttatttgagcttatctactggcataag 2295208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 14385709 - 14385751
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||    
T  14385709 gcctgttcggattggcttatttgagcttatctactggcataag 14385751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 18327067 - 18327109
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataagaactt 56  Q
    |||||||||||||||||||||||||| |||| |||||| ||||    
T  18327067 tttggattggcttatttgagcttatctactgtcataagcactt 18327109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 22416832 - 22416869
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  22416832 tttggattggcttatttgagcttatctactggcataag 22416869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 32958789 - 32958740
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    |||||| ||||| |||||||||||||||| |||| |||||| ||||||||    
T  32958789 ctgtttagattgacttatttgagcttatctactgtcataagcacttgtga 32958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 36602936 - 36602895
Alignment:
Q  20 ttggcttatttgagcttatcaactgacataagaacttgtgaa 61  Q
    |||| ||||||||||||||| ||| |||||||||||||||||    
T  36602936 ttggattatttgagcttatctactaacataagaacttgtgaa 36602895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 1432664 - 1432628
Alignment:
Q  14 tttggattggcttatttgagcttatcaactgacataa 50  Q
    |||||||||||||||||||||||||| || |||||||    
T  1432664 tttggattggcttatttgagcttatccaccgacataa 1432628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 15942657 - 15942693
Alignment:
Q  3 ccgatagcctgtttggattggcttatttgagcttatc 39  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  15942657 ccgagagcctgtttggattggcttatttgagcctatc 15942693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 34952354 - 34952326
Alignment:
Q  11 ctgtttggattggcttatttgagcttatc 39  Q
    |||||||||||||||||||||||||||||    
T  34952354 ctgtttggattggcttatttgagcttatc 34952326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 34430867 - 34430832
Alignment:
Q  10 cctgtttggattggcttatttgagcttatcaactga 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  34430867 cctgtttggattggcttatttgagcttatcaactga 34430832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 33068520 - 33068566
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataagaacttg 57  Q
    |||||||||||||||||||||| |||||| ||||||||||| |||||    
T  33068520 ctgtttggattggcttatttgaacttatctactgacataagcacttg 33068566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 35069528 - 35069570
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  35069528 gcctgtttgtattggcttatttgagcttatctactgacataag 35069570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 2457095 - 2457046
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgt 58  Q
    ||||||||||||||||||||||||| ||||| || |||||||| ||||||    
T  2457095 gcctgtttggattggcttatttgagattatctaccgacataagcacttgt 2457046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 31624412 - 31624372
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  31624412 ctgtttggattggcttatttgagcttatatactgacataag 31624372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 4163304 - 4163265
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  4163304 tgtttggattggcttatttgagcttatctactggcataag 4163265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 4224925 - 4224886
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  4224925 tgtttggattggcttatttgagcttatctactggcataag 4224886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 4308928 - 4308889
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataag 4308889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 21405072 - 21405112
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||| |||||||||||||||  |||||||||||    
T  21405072 ctgtttggattgacttatttgagcttatatactgacataag 21405112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 33080497 - 33080545
Alignment:
Q  12 tgtttggattggcttatttgagcttatcaactgacataagaacttgtga 60  Q
    ||||||||| |||||||||||||||||  |||| |||||| ||||||||    
T  33080497 tgtttggataggcttatttgagcttatttactggcataagcacttgtga 33080545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 34404644 - 34404684
Alignment:
Q  11 ctgtttggattggcttatttgagcttatcaactgacataag 51  Q
    |||||||||||  |||||||||| |||||||||||||||||    
T  34404644 ctgtttggatttacttatttgagtttatcaactgacataag 34404684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 35070570 - 35070598
Alignment:
Q  9 gcctgtttggattggcttatttgagctta 37  Q
    |||||||||||||||||||||||||||||    
T  35070570 gcctgtttggattggcttatttgagctta 35070598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 159889 - 159943
Alignment:
Q  9 gcctgtttggattggcttatttgagcttatcaactgacataagaacttgtgaaac 63  Q
    ||||||||||||||||||||||||||||||| ||| | ||||  |||||||||||    
T  159889 gcctgtttggattggcttatttgagcttatctactaatataaacacttgtgaaac 159943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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