View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14454_low_3 (Length: 376)
Name: NF14454_low_3
Description: NF14454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14454_low_3 |
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| [»] scaffold0216 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 81 - 322
Target Start/End: Complemental strand, 13475553 - 13475312
Alignment:
| Q |
81 |
atcatactgtctcattatatgcaatgtctggtttagtgcgacattttgaattgcagttgcaatcttaatagtcttgttatccttaataatgtcgagttgt |
180 |
Q |
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| T |
13475553 |
atcatactgtctcattatatgcaatgtctagtttagtgcgacattttgaattgcagttgcaatcttaatagtcttgttatccttaataatgtcgagttgt |
13475454 |
T |
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| Q |
181 |
gttgtagtttagcttgtttgtttgtgcgttggcgagagagtagacttgcgtttatggaaaagttacaaatattagcttcaaaatgctacgttcacagttg |
280 |
Q |
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| T |
13475453 |
gttgtagtttagcttgtttgtttgtgcgttggcgagtgagtagacttgcgtttacgaagaagttacaaatattagcttcacaatactacgttcacaattg |
13475354 |
T |
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| Q |
281 |
taaacatcatgccaaatagtcatctatatcgtggagcaaata |
322 |
Q |
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| T |
13475353 |
taaacatcatgccaaatagacatctatatcgtggagcaaata |
13475312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 13475848 - 13475777
Alignment:
| Q |
17 |
agttatcatccggtaaataataaacttaaacaaaattattttggtagtgaagttttaattaattatcatact |
88 |
Q |
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| T |
13475848 |
agttatcatccggtaaataataaacttaaacaaaattattttggtagtgaagttttaattaattatcatact |
13475777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 20069949 - 20069903
Alignment:
| Q |
317 |
caaataaatatgatgcttgtagagaagggtgactatgaaaataccct |
363 |
Q |
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| T |
20069949 |
caaataaatatgatgcttgtagagaagggtggctatggaagtaccct |
20069903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 28395 - 28354
Alignment:
| Q |
312 |
tggagcaaataaatatgatgcttgtagagaagggtgactatg |
353 |
Q |
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| T |
28395 |
tggagcagataaatatgatgcttgtagagaagggtggctatg |
28354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 342
Target Start/End: Original strand, 6561879 - 6561909
Alignment:
| Q |
312 |
tggagcaaataaatatgatgcttgtagagaa |
342 |
Q |
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| T |
6561879 |
tggagcaaataaatatgatgcttgtagagaa |
6561909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 29456450 - 29456414
Alignment:
| Q |
306 |
atatcgtggagcaaataaatatgatgcttgtagagaa |
342 |
Q |
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| T |
29456450 |
atattgtggagcaaataaatatgatggttgtagagaa |
29456414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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