View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14454_low_5 (Length: 238)
Name: NF14454_low_5
Description: NF14454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14454_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2597737 - 2597513
Alignment:
| Q |
1 |
caaaggatgttaattatggtgacttccattttctttgttaattgcataaaacatatgtttatgttttccattgctaaaatatcacactattataagtttt |
100 |
Q |
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| T |
2597737 |
caaaggatgttaattatggtgacttccattttctttgttaattgcataaaacatatgtttatgttttccattgcaaaaatatcacattattataagtttt |
2597638 |
T |
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| Q |
101 |
caaatatttataataatagtagaatacttttcaatgttttctatactaaaatctgaaaaataataccttgtgcattgtgattctttctataacattttat |
200 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2597637 |
caaatatttataaaaatattagaatacttttcaatgttttctatactaaaatctgcaaaataataccttgtgcattgtgattctttctataacattttct |
2597538 |
T |
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| Q |
201 |
ttattccaattaatgacataggtaa |
225 |
Q |
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|||||||||||||||||||| |||| |
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| T |
2597537 |
ttattccaattaatgacatacgtaa |
2597513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 2570183 - 2570139
Alignment:
| Q |
16 |
atggtgacttccattttctttgttaattgcataaaacatatgttt |
60 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
2570183 |
atggtggcttccattttctttgttaattgcatgaaacatatgttt |
2570139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 2570133 - 2570080
Alignment:
| Q |
107 |
tttataataatagtagaatacttttcaatgttttctatactaaaatctgaaaaa |
160 |
Q |
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||||||| | || ||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
2570133 |
tttataaaagtaatagaataattttcaatgttttctatactaaaatttgaaaaa |
2570080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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