View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14455_high_3 (Length: 532)

Name: NF14455_high_3
Description: NF14455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14455_high_3
NF14455_high_3
[»] chr5 (2 HSPs)
chr5 (16-464)||(14962281-14962730)
chr5 (481-516)||(14962229-14962264)
[»] scaffold0477 (2 HSPs)
scaffold0477 (121-207)||(8848-8935)
scaffold0477 (16-109)||(8768-8861)
[»] chr4 (2 HSPs)
chr4 (121-207)||(18179850-18179937)
chr4 (21-109)||(18179775-18179863)
[»] chr1 (2 HSPs)
chr1 (121-195)||(2156747-2156821)
chr1 (148-195)||(593037-593083)
[»] chr6 (2 HSPs)
chr6 (21-109)||(4639256-4639344)
chr6 (121-188)||(4639202-4639269)
[»] chr3 (2 HSPs)
chr3 (121-192)||(46144306-46144377)
chr3 (35-109)||(46144245-46144319)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Complemental strand, 14962730 - 14962281
Alignment:
Q  16 atccaaaaaagattacaacattctcatcatcaatttagcggaactagtatttttatacgaaatctctagccaaccttttagtaaagaatcttttccttnn 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||      
T  14962730 atccaaaaaagattacaacattctcatcatcaacttagcggaaatagtatttttattcgaaatctctggccaaccttttagtaaagaatcttttccttaa 14962631  T
Q  116 nnnnn-gtaaagaatcttttattaagatcaagaatgttattactcgataaatagtcacttcaaaaatttctttgtcctcaag-cagctaaattttcagaa 213  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  14962630 aaaaaagtaaagaatcttttattaagatcaagaatgttattactcgataaatagtcacttcaaaaatttccttgtcctcaaggcagctaaattttcagaa 14962531  T
Q  214 ataagtcggtcactacaacaatcaatcaaaaaagacaaactagatgcttttgcctatcaacctgaagttgtaggtccaaagacagctttctttactttgg 313  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14962530 ataagtcggtcactacaacaatcaatcaaaaaagacaaacaagatacttttgcctatcaacctgaagttgtaggtccaaagacagctttctttactttgg 14962431  T
Q  314 cccatgacatgaacatttcaagagctccaatatcattgaaatgcatcatgaaaaaagaaattgtatggaccacacacgtctttacgaaccaagacaatat 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14962430 cccatgacatgaacatttcaagagctccaatatcattgaaatgcatcatgaaaaaagaaattgtatggaccacacacgtctttatgaaccaagacaatat 14962331  T
Q  414 acaattgggaaccataatgtattatgaaaaatttatcaaaccattattaac 464  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14962330 acaattgggaaccataatgtattatgaaaaatttatcaaa-cattattaac 14962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 516
Target Start/End: Complemental strand, 14962264 - 14962229
Alignment:
Q  481 tgtgtcgctaacaacgtttctattttgttccctatt 516  Q
    |||||||||||||| |||||||||||||||||||||    
T  14962264 tgtgtcgctaacaatgtttctattttgttccctatt 14962229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 8848 - 8935
Alignment:
Q  121 gtaaagaatcttttattaagatcaagaatgttattactcgataaatagtcacttcaaaaatttctttgtcctcaa-gcagctaaattt 207  Q
    |||||| |||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||||||    
T  8848 gtaaaggatcttttattaacatcaagtatgttattactggataaatagtcacttcaacaatttctttgtcctcaacgctgctaaattt 8935  T

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Target: scaffold0477; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 8768 - 8861
Alignment:
Q  16 atccaaaaaagattacaacattctcatcatcaatttagcggaactagtatttttatacgaaatctctagccaaccttttagtaaagaatctttt 109  Q
    |||||||||||||| ||| |||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||   |||||| |||||||    
T  8768 atccaaaaaagattgcaatattctcattatcaacttagcgggactagtatttttacacgaaatctctagccaaccttcctgtaaaggatctttt 8861  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 18179850 - 18179937
Alignment:
Q  121 gtaaagaatcttttattaagatcaagaatgttattactcgataaatagtcacttcaaaaatttctttgtcctcaa-gcagctaaattt 207  Q
    |||||| |||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||||||    
T  18179850 gtaaaggatcttttattaacatcaagtatgttattactggataaatagtcacttcaacaatttctttgtcctcaacgctgctaaattt 18179937  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 18179775 - 18179863
Alignment:
Q  21 aaaaagattacaacattctcatcatcaatttagcggaactagtatttttatacgaaatctctagccaaccttttagtaaagaatctttt 109  Q
    ||||||||| ||| |||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||   |||||| |||||||    
T  18179775 aaaaagattgcaatattctcattatcaacttagcgggactagtatttttacacgaaatctctagccaaccttcctgtaaaggatctttt 18179863  T

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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 2156821 - 2156747
Alignment:
Q  121 gtaaagaatcttttattaagatcaagaatgttattactcgataaatagtcacttcaaaaatttctttgtcctcaa 195  Q
    |||||| |||||||||||| |||||| ||||||||||| ||||||||||||||| || |||||||||||||||||    
T  2156821 gtaaaggatcttttattaacatcaagtatgttattactggataaatagtcacttgaacaatttctttgtcctcaa 2156747  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 593037 - 593083
Alignment:
Q  148 atgttattactcgataaatagtcacttcaaaaatttctttgtcctcaa 195  Q
    ||||||||||| |||||||||||||||| || ||||||||||||||||    
T  593037 atgttattactagataaatagtcacttc-aacatttctttgtcctcaa 593083  T

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Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 4639344 - 4639256
Alignment:
Q  21 aaaaagattacaacattctcatcatcaatttagcggaactagtatttttatacgaaatctctagccaaccttttagtaaagaatctttt 109  Q
    ||||||||| ||| |||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||   |||||| |||||||    
T  4639344 aaaaagattgcaatattctcattatcaacttagcgggactagtatttttacacgaaatctctagccaaccttcctgtaaaggatctttt 4639256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 4639269 - 4639202
Alignment:
Q  121 gtaaagaatcttttattaagatcaagaatgttattactcgataaatagtcacttcaaaaatttctttg 188  Q
    |||||| |||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  4639269 gtaaaggatcttttattaacatcaagtatgttattactggataaatagtcacttcaacaatttctttg 4639202  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 46144306 - 46144377
Alignment:
Q  121 gtaaagaatcttttattaagatcaagaatgttattactcgataaatagtcacttcaaaaatttctttgtcct 192  Q
    |||||| |||||||||||| |||||| |||||||||||  ||||||||||||||||| ||||||||||||||    
T  46144306 gtaaaggatcttttattaacatcaagtatgttattactgcataaatagtcacttcaacaatttctttgtcct 46144377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 46144245 - 46144319
Alignment:
Q  35 attctcatcatcaatttagcggaactagtatttttatacgaaatctctagccaaccttttagtaaagaatctttt 109  Q
    |||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||   |||||| |||||||    
T  46144245 attctcattatcaacttagcgggactagtatttttacacgaaatctctagccaaccttcctgtaaaggatctttt 46144319  T

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