View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14455_low_11 (Length: 284)

Name: NF14455_low_11
Description: NF14455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14455_low_11
NF14455_low_11
[»] chr7 (4 HSPs)
chr7 (15-265)||(30807249-30807499)
chr7 (129-265)||(30805890-30806026)
chr7 (129-222)||(26962829-26962914)
chr7 (15-49)||(30807506-30807540)
[»] chr3 (4 HSPs)
chr3 (129-222)||(37830950-37831044)
chr3 (129-222)||(33769269-33769356)
chr3 (129-222)||(39465439-39465529)
chr3 (129-222)||(33779840-33779925)
[»] chr5 (1 HSPs)
chr5 (129-222)||(26577027-26577120)
[»] chr2 (3 HSPs)
chr2 (129-222)||(37605304-37605391)
chr2 (129-222)||(4245406-4245501)
chr2 (182-222)||(27544458-27544498)
[»] chr1 (2 HSPs)
chr1 (129-222)||(27682115-27682200)
chr1 (129-222)||(335355-335440)
[»] chr8 (1 HSPs)
chr8 (129-222)||(37695251-37695336)
[»] chr4 (2 HSPs)
chr4 (129-222)||(9984189-9984274)
chr4 (185-222)||(15605285-15605322)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 30807499 - 30807249
Alignment:
Q  15 agcagagagtaacttatttgatacctatatgatttcaattgtatcttcctgtttcaagcacatgtttgaagctgtggactaataattgtttcttttttac 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30807499 agcaaagagtaacttatttgatacctatatgatttcaattgtatcttcctgtttcaagcacatgtttgaagctgtggactaataattgtttcttttttac 30807400  T
Q  115 caaaatnnnnnnnntccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagct 214  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30807399 caaaataaaaaaaatccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagct 30807300  T
Q  215 aaggtcgggatgagtaataattgcttaatcaaatagaaaaggcaatgggaa 265  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30807299 aaggtcgggatgggtaataattgcttaatcaaatagaaaaggcaatgggaa 30807249  T

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Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 129 - 265
Target Start/End: Complemental strand, 30806026 - 30805890
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgggatgag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30806026 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgggatgag 30805927  T
Q  229 taataattgcttaatcaaatagaaaaggcaatgggaa 265  Q
    ||||||||| |||||||||||||||||||||||||||    
T  30805926 taataattgtttaatcaaatagaaaaggcaatgggaa 30805890  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 26962914 - 26962829
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||| || ||         ||||||||||||||||||||||||||||||||||||||||||    
T  26962914 tccgacctaccggattcgaaccagtgacctaaggatgtctgtta--------accaactacagtcctccgctctaccaactgagctaaggtcgg 26962829  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 30807540 - 30807506
Alignment:
Q  15 agcagagagtaacttatttgatacctatatgattt 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  30807540 agcagagagtaacttatttgttacctatatgattt 30807506  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 37831044 - 37830950
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgt-taccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||    
T  37831044 tccgacctaccggattcgaaccagtgacctaaggatggctattaggcttttataccaactacagtcctccgctctaccaactgagctaaggtcgg 37830950  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 33769269 - 33769356
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||| || |||        ||||||||||||||||||||||||||||||||||||||||||    
T  33769269 tccgacctaccggattcgaaccagtgacctaaggatgtctgtttaa------accaactacagtcctccgctctaccaactgagctaaggtcgg 33769356  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 39465529 - 39465439
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgtta--ccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||     ||  ||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  39465529 tccgacctaccggattcgaaccagtgacctaaggat-----ttcagcatggtattccaactacagtcctccgctctaccaactgagctaaggtcgg 39465439  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 33779840 - 33779925
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||  ||     || |   ||||||||||||||||||||||||||||||||||||||||||    
T  33779840 tccgacctaccggattcgaaccagtgacctaaggatatct-----gcgt---accaactacagtcctccgctctaccaactgagctaaggtcgg 33779925  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 26577027 - 26577120
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||  ||||  ||    | ||| ||||||||||||||||||||||||||||||||||||||    
T  26577027 tccgacctaccggattcgaaccagtgacctaaggatatctatcaggttattaacccactacagtcctccgctctaccaactgagctaaggtcgg 26577120  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 37605304 - 37605391
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||    || ||  | |||||| ||||||||||||||||||||||||||||||||||||||    
T  37605304 tccgacctaccggattcgaaccagtgacctaaggat----atctg--aggttacccactacagtcctccgctctaccaactgagctaaggtcgg 37605391  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 4245501 - 4245406
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatg--ttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    |||||||| ||||||||||||||| |||||||||||  |    ||| |||  || |||||||||||||||||||||||||||||||||||||||||    
T  4245501 tccgacctgccggattcgaaccagcgacctaaggatttcagcatggtatggttttccaactacagtcctccgctctaccaactgagctaaggtcgg 4245406  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 27544458 - 27544498
Alignment:
Q  182 ccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  27544458 ccaactacagtcctccactctaccaactgagctaaggtcgg 27544498  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 27682115 - 27682200
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||| || ||         ||||||||||||||||||||||||||||||||||||||||||    
T  27682115 tccgacctaccggattcgaaccagtgacctaaggatgtctgttg--------accaactacagtcctccgctctaccaactgagctaaggtcgg 27682200  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 335440 - 335355
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    |||||||||||| |||||||||||||||||||||||| || ||         | ||||||||||||||||||||||||||||||||||||||||    
T  335440 tccgacctaccgaattcgaaccagtgacctaaggatgtctgtta--------aacaactacagtcctccgctctaccaactgagctaaggtcgg 335355  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 37695336 - 37695251
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||| || ||         |||||||||||||||||||||||||| |||||||||||||||    
T  37695336 tccgacctaccggattcgaaccagtgacctaaggatgtctgtta--------accaactacagtcctccgctctaccatctgagctaaggtcgg 37695251  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 9984189 - 9984274
Alignment:
Q  129 tccgacctaccggattcgaaccagtgacctaaggatggctatttggcatgttaccaactacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||  || ||         | ||||||||||||||||||||||||||||||||||||||||    
T  9984189 tccgacctaccggattcgaaccagtgacctaaggatatctgttg--------aacaactacagtcctccgctctaccaactgagctaaggtcgg 9984274  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 15605285 - 15605322
Alignment:
Q  185 actacagtcctccgctctaccaactgagctaaggtcgg 222  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15605285 actacagtcctccgctctaccaactgagctaaggtcgg 15605322  T

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