View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14455_low_2 (Length: 588)

Name: NF14455_low_2
Description: NF14455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14455_low_2
NF14455_low_2
[»] chr4 (2 HSPs)
chr4 (7-570)||(9925478-9926057)
chr4 (92-155)||(10390067-10390130)
[»] chr8 (4 HSPs)
chr8 (70-220)||(12268385-12268536)
chr8 (122-220)||(7754720-7754819)
chr8 (16-75)||(7754869-7754928)
chr8 (16-66)||(12268553-12268603)
[»] chr7 (4 HSPs)
chr7 (123-178)||(28106120-28106176)
chr7 (7-75)||(44002542-44002612)
chr7 (17-74)||(3799401-3799458)
chr7 (157-189)||(36438145-36438177)
[»] chr5 (3 HSPs)
chr5 (111-218)||(4177647-4177755)
chr5 (7-74)||(17463218-17463285)
chr5 (136-180)||(13288915-13288959)
[»] chr1 (4 HSPs)
chr1 (16-75)||(8115612-8115671)
chr1 (105-182)||(8115716-8115794)
chr1 (111-161)||(50371627-50371677)
chr1 (7-72)||(50371509-50371574)
[»] chr2 (1 HSPs)
chr2 (16-75)||(26261664-26261723)


Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 7 - 570
Target Start/End: Original strand, 9925478 - 9926057
Alignment:
Q  7 atgtcgaagaatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatatg-------------cctcctaaatttttaggt 93  Q
    |||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||             ||||||||||||||||||    
T  9925478 atgttgaaaaatataattgttaattttgttatatgttgaacgttgaatgttgacaaatttaggtatatgtcgttaatatatgcctcctaaatttttaggt 9925577  T
Q  94 tctgcatttatttcagccttcctttatacctcctaaattgcgtcttaggattagaaagttttaaaaaa---ttgcatttttattttactgagacctatta 190  Q
    |||  |||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  9925578 tctaaatttttttcagtcttcctctatacctcctaaattgcgtcttaggattagaaagttttaaaaaaaaattgcatttttattttactgagacctatta 9925677  T
Q  191 tactttaagagtcgagccttttatttcataagaatcgcgttgatttatgttaagacttacctccattaaaaaaggatgatatttgtcacaacaaatacct 290  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  9925678 tactttaagagttgagccttttatttcataagaaccgcgttgatttatgttaagactttcctccattaaaaaaggatgttatgtgtcacaacaaatacct 9925777  T
Q  291 tataaatttcctcaaaaataagaaaaatctcactgatttgcgtatccaa-aaattgctcgacaaagataaatcattgttaagggtggtagatattggtat 389  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||    
T  9925778 tacaaatttcatcaaaaataagaaaaatctcactgatttgcgtatccaacaaattgctcgacaaagataaatcattgtta-gggttgtagatattggaat 9925876  T
Q  390 ttacatggttagaagaaaaaatatccaaaacaaattaattgttatcttttatgttatattccagagtatagcttcacctttcatgtaagatgtaatattt 489  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  9925877 ttacatggttagaagtaaaaatatccaaaacaaattaactgttatcttttatgttatattccagagtatagtttcacctttcacgtaagatgtaatattt 9925976  T
Q  490 ttctactttatcttacacgaagtgaaatctgacatgatggccctcatgtgtttgcttgaaagagtatgaagagaatcatag 570  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9925977 ttctagtttatcttacacgaagtgaaatctgacatgatggccctcatgtgtttgcttgaaagagtatgaagagaatcatag 9926057  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 10390067 - 10390130
Alignment:
Q  92 gttctgcatttatttcagccttcctttatacctcctaaattgcgtcttaggattagaaagtttt 155  Q
    |||||||||||  || || |||||| ||| ||||||||||||| ||||||||||||||| ||||    
T  10390067 gttctgcattttattaagtcttcctctatgcctcctaaattgcctcttaggattagaaattttt 10390130  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 12268536 - 12268385
Alignment:
Q  70 tatatgcctcctaaatttttaggttctgcatttatttc-agccttcctttatacctcctaaattgcgtcttaggattagaaagttttaaaaaattgcatt 168  Q
    ||||||||||||||||||| | |||||  |||| |||  || |||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||    
T  12268536 tatatgcctcctaaatttt-atgttctaaatttttttttagtcttcctttatgcctcttaaattgcctcttaggattaaaaagttttaaaaaattgcatt 12268438  T
Q  169 tttattttactga-gacctattatactttaagagtcgagccttttatttcata 220  Q
    |||| |||||||| |  ||||| |||| | ||||||||||||  |||||||||    
T  12268437 tttaatttactgagggtctattttactatgagagtcgagcctcctatttcata 12268385  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 7754819 - 7754720
Alignment:
Q  122 cctcctaaattgcgtcttaggattagaaagttttaaaaaattgcatttttattttact-gagacctattatactttaagagtcgagccttttatttcata 220  Q
    |||| |||||||| ||||||||||||||||||| |||||||||| |||||||||||||  ||| |||||||| | | |||||||||| |  |||||||||    
T  7754819 cctcttaaattgcctcttaggattagaaagtttaaaaaaattgcgtttttattttactaaagatctattatattattagagtcgagcatcctatttcata 7754720  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 7754928 - 7754869
Alignment:
Q  16 aatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatatg 75  Q
    |||||||||| ||||||||||| | | || | ||||||||||||||||||| ||||||||    
T  7754928 aatataattgctaattttgttacaaagtggacgttgaatgttgacaaattttggtatatg 7754869  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 12268603 - 12268553
Alignment:
Q  16 aatataattgttaattttgttatatattgaaagttgaatgttgacaaattt 66  Q
    |||||||||| ||||||||||||||  || | |||||||||||||||||||    
T  12268603 aatataattgctaattttgttatatgatggacgttgaatgttgacaaattt 12268553  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 28106120 - 28106176
Alignment:
Q  123 ctcctaaattgcgtcttaggattagaaagtttt-aaaaaattgcatttttattttac 178  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  28106120 ctcctaaattgcttcttaggattagaaagttttaaaaaaattacatttttattttac 28106176  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 44002612 - 44002542
Alignment:
Q  7 atgtcgaagaatataattgttaattttgttatata--ttgaaagttgaatgttgacaaatttaggtatatg 75  Q
    |||| ||| |||||||||| |||||||||||||||  ||| | ||||||||||||||| ||| ||||||||    
T  44002612 atgttgaaaaatataattgctaattttgttatatatgttggacgttgaatgttgacaagttttggtatatg 44002542  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 3799458 - 3799401
Alignment:
Q  17 atataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatat 74  Q
    ||||||||| || ||||||||||| ||| |  |||||||||||||||||| |||||||    
T  3799458 atataattgctatttttgttatatgttggacattgaatgttgacaaattttggtatat 3799401  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 36438177 - 36438145
Alignment:
Q  157 aaaaattgcatttttattttactgagacctatt 189  Q
    |||||||||||||||||||||||||| ||||||    
T  36438177 aaaaattgcatttttattttactgaggcctatt 36438145  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 4177647 - 4177755
Alignment:
Q  111 cttcctttatacctcctaaattgcgtcttaggattagaaag-ttttaaaaaattgcatttttattttactgagacctattatactttaagagtcgagcct 209  Q
    |||||||||| ||||||||||||| || |||||||  |||| ||||||||||||| |||||||||||| || |  ||||| |||| | ||||||||||||    
T  4177647 cttcctttatgcctcctaaattgcctcataggattttaaagtttttaaaaaattgtatttttattttaatggggtctattttactatgagagtcgagcct 4177746  T
Q  210 tttatttca 218  Q
      |||||||    
T  4177747 cctatttca 4177755  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 17463218 - 17463285
Alignment:
Q  7 atgtcgaagaatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatat 74  Q
    |||| ||| |||||||||| |||||||||||||| |||   ||||||||||||||||||| |||||||    
T  17463218 atgttgaaaaatataattgctaattttgttatatgttgggtgttgaatgttgacaaattttggtatat 17463285  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 13288915 - 13288959
Alignment:
Q  136 tcttaggattagaaagttttaaaaaattgcatttttattttactg 180  Q
    ||||||||||| |||||||||||||||| | ||||||||||||||    
T  13288915 tcttaggattaaaaagttttaaaaaattacgtttttattttactg 13288959  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 8115612 - 8115671
Alignment:
Q  16 aatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatatg 75  Q
    |||||||||| |||||||||||||| ||| | ||||||||||||||||||| ||||||||    
T  8115612 aatataattgctaattttgttatatgttggacgttgaatgttgacaaattttggtatatg 8115671  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 8115716 - 8115794
Alignment:
Q  105 ttcagccttcctttatacctcctaaattgcgtcttaggattagaaagttt-taaaaaattgcatttttattttactgag 182  Q
    ||||| |||||| ||| ||| ||||||||| ||||| |||||||||||||  |||||||||| ||||||||||||||||    
T  8115716 ttcagtcttcctctatgccttctaaattgcttcttacgattagaaagtttaaaaaaaattgcgtttttattttactgag 8115794  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 50371627 - 50371677
Alignment:
Q  111 cttcctttatacctcctaaattgcgtcttaggattagaaagttttaaaaaa 161  Q
    |||||| ||| ||||||||||||| || || ||||||||||||||||||||    
T  50371627 cttcctctatgcctcctaaattgcctcctaagattagaaagttttaaaaaa 50371677  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 50371509 - 50371574
Alignment:
Q  7 atgtcgaagaatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtat 72  Q
    |||| ||| |||||||||| |||||||||||||| ||| | | |||||||||| |||||| |||||    
T  50371509 atgttgaaaaatataattgctaattttgttatatgttggatgctgaatgttgataaattttggtat 50371574  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 26261664 - 26261723
Alignment:
Q  16 aatataattgttaattttgttatatattgaaagttgaatgttgacaaatttaggtatatg 75  Q
    |||||||||| ||||||| ||||||  || | ||||||||||||||||||| ||||||||    
T  26261664 aatataattggtaattttcttatatggtggacgttgaatgttgacaaattttggtatatg 26261723  T

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