View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14455_low_7 (Length: 320)
Name: NF14455_low_7
Description: NF14455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14455_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 43113686 - 43113834
Alignment:
| Q |
1 |
tacacattcatagttgttcttacctcaacaacaaaatgtactgtttcatttgcgtccgtattagaaagaaaaataactgtggaagaagagagaatcttca |
100 |
Q |
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| T |
43113686 |
tacacattcatagttgttcttacctcaacaacaaaatgtactgtttcatttgcgtccgtattagaaagaaaaataactgtggaagaagagagaatcttca |
43113785 |
T |
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| Q |
101 |
gttcaaattttaatattattatatctaataaaaaatagtactattgatg |
149 |
Q |
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| T |
43113786 |
gttcaaattttaatattattatatctaataaaaaatagtactattgatg |
43113834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 43113924 - 43113981
Alignment:
| Q |
239 |
ccacgttgaatggagtaagcgtagaaaatgggtcgtggaaaaactcgaaatttgaatg |
296 |
Q |
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| T |
43113924 |
ccacgttgaatggagtaagcgtagaaaatgggtcgtggaaaaactcaaaatttgaatg |
43113981 |
T |
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