View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14456_high_2 (Length: 579)
Name: NF14456_high_2
Description: NF14456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14456_high_2 |
 |  |
|
| [»] scaffold0881 (2 HSPs) |
 |  |  |
|
| [»] scaffold1353 (2 HSPs) |
 |  |  |
|
| [»] scaffold1352 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0881 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: scaffold0881
Description:
Target: scaffold0881; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 3938 - 3378
Alignment:
| Q |
1 |
cagaggtagaaaatctaagtcatgtgtggatgaatcgtgcaaacatgttgaaaaggtagttccaaaagtaaatgaggatccaaaagcaaatgtggcaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
3938 |
cagaggtagaaaatctaagtcatgtgtggatgaatcgtgcaaacatgttgaaaaggtagttccaaaagtaaaggaggacccaaaagcaaatgtggcaagc |
3839 |
T |
 |
| Q |
101 |
ataaaaaaggctaactcagtgggcggcattgttatttgtgaaccaaatcaaagtgaagccaagggtatgaagaattttttaataaataataatgatgaag |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3838 |
ataaaaaaggctaacacagtgggcggcattgttatttgtgaaccaaatcaaagtgaagccaagggtatgaagaattttttaataaataataatgatgaag |
3739 |
T |
 |
| Q |
201 |
aatctaacattgatcataaaggaaaagggtatttgattcnnnnnnntgagttagattcttcatcctcttcggaagaagaagacctagcatttgcatcaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3738 |
aatctaacattgatcataaaggaaaagggaatttgattcaaacaaatgaattagattcttcatcctcttcggaagaagaagacctagcatttgcatcaca |
3639 |
T |
 |
| Q |
301 |
ttctaaactctttccatatgatgcactacgatttggggaaggtgcctcaaagttttttcaagatgaaactgattttaggcgccaaatcaatattggggaa |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
3638 |
ttctaaactctttccatatgatacactacgatttggggaaggtgcctcaaagttttttcaagatggaaccgattttaggcgccaactcaatattggggaa |
3539 |
T |
 |
| Q |
401 |
ggcatcaaagaaaatgctttggaagatatccagatccctcaaaaccatgtccaagtaagtactcctaaattataacactcgcatttaaaattactttctt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3538 |
ggcatcaaagaaaatgctttggaagatatccagatccctcaaaaccatgtccaagtaagtactcctaaattataacactcgcatttaaaattactttctt |
3439 |
T |
 |
| Q |
501 |
aatgaatagaataagtgagctcatggtataaatatgaaatttacattgataaccaacatac |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438 |
aatgaatagaataagtgagctcatggtataaatatgaaatttacattgataaccaacatac |
3378 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0881; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4034 - 3973
Alignment:
| Q |
1 |
cagaggtagaaaatctaagtcatgtgtggatgaatcgtgcaaacatgttgaaaaggtagttc |
62 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4034 |
cagaggtagaaaatttaagtcgcgtgtggatgaatcgtgcaaacatgttgaaaaggtagttc |
3973 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 60 - 402
Target Start/End: Complemental strand, 10027109 - 10026764
Alignment:
| Q |
60 |
ttccaaaagtaaatgaggatccaaaagcaaatgtggcaagcataaaaaaggctaactcagtgggcggcattgttatttgtgaaccaaatcaaagtgaagc |
159 |
Q |
| |
|
|||||||| |||| |||| |||||||| |||||| |||||||||||| |||| | |||||||||||||||||| | ||||||||| ||| || | |
|
|
| T |
10027109 |
ttccaaaaataaaggagggcccaaaagctaatgtgatgagcataaaaaagactaatttagtgggcggcattgttatctctgaaccaaaggaaactgtaat |
10027010 |
T |
 |
| Q |
160 |
caagggtatgaagaattttttaataaataataatgatgaagaatctaacattgatcataaaggaaaagggtatttgattcnnnnnnntgag---ttagat |
256 |
Q |
| |
|
||||||| || ||| ||| ||| |||||||||||||| ||| ||| ||||| | |||||||||||||| || |||||| |||| || || |
|
|
| T |
10027009 |
ggagggtatcaataatgtttcaatcaataataatgatgatgaagctagcattgttgataaaggaaaagggaatatgattcaatcaaatgaggaattggaa |
10026910 |
T |
 |
| Q |
257 |
tcttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgatgcactacgatttggggaaggtgcctcaaagtttt |
356 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || ||||||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10026909 |
tcttcatcctctttggaagaagaagtcctagaatctgcatcacatttcatactctttccacatgatgcactacaatttggggaaggtgcctcaaagtttt |
10026810 |
T |
 |
| Q |
357 |
ttcaagatgaaactgattttaggcgccaaatcaatattggggaagg |
402 |
Q |
| |
|
|| |||||| |||||||| ||| | | || |||||||||| ||||| |
|
|
| T |
10026809 |
ttgaagatggaactgattctagactcgaactcaatattggtgaagg |
10026764 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 248 - 415
Target Start/End: Original strand, 8730544 - 8730711
Alignment:
| Q |
248 |
gagttagattcttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgatgcactacgatttggggaaggtgcct |
347 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||||| | |||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8730544 |
gagttagaaacttcatcctctttggaagaagaaatcctagaagttgcatcacatttcctactctttccacatgatgcactacaatttggggaaggtgcct |
8730643 |
T |
 |
| Q |
348 |
caaagttttttcaagatgaaactgattttaggcgccaaatcaatattggggaaggcatcaaagaaaat |
415 |
Q |
| |
|
||||||||| | |||||| |||| ||| ||||| | || |||||||||| ||||| ||| | |||||| |
|
|
| T |
8730644 |
caaagttttatgaagatggaactaattctaggctcgaactcaatattggtgaaggtatcgatgaaaat |
8730711 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 6 - 415
Target Start/End: Original strand, 10026298 - 10026708
Alignment:
| Q |
6 |
gtagaaaatctaagtcatgtgtggatgaatcgtgcaaacatgttgaaaaggtagttccaaaagtaaatgaggatccaaaagcaaatgtggcaagcataaa |
105 |
Q |
| |
|
|||||||| |||| || | |||||| ||| |||||||||| | ||||| | | ||| |||| |||| |||| ||||||||||||||| |||||||| |
|
|
| T |
10026298 |
gtagaaaacctaaatcttatgtggaggaagggtgcaaacatatagaaaatgaatttcaaaaaataaaagagggtccaaaagcaaatgtaatgagcataaa |
10026397 |
T |
 |
| Q |
106 |
aaaggctaactcagtgggcggcattgttatttgtgaaccaaatcaaagtgaagccaagggtatgaagaattttttaataaataataatgatgaagaatct |
205 |
Q |
| |
|
|||| |||| | |||||| || |||||||||||||||||||| |||| || | ||||||| || | | ||| ||| |||||||||||| | ||| || |
|
|
| T |
10026398 |
aaagactaaattagtgggaggtattgttatttgtgaaccaaagcaaattggaatggagggtatcaatagtgtttcaatcaataataatgataatgaagct |
10026497 |
T |
 |
| Q |
206 |
aacattgatcataaaggaaaagggtatttgattcnnnnnnntg---agttagattcttcatcctcttcggaagaagaagacctagcatttgcatcacatt |
302 |
Q |
| |
|
| | ||| | |||||||||||||| || |||||| || ||||||| |||||||||||| | ||||| ||| |||||||||||||||||||| |
|
|
| T |
10026498 |
agcgttgttgataaaggaaaagggaatatgattcaaacaaatgagtagttagaatcttcatcctctatgaaagaaaaagtcctagcatttgcatcacatt |
10026597 |
T |
 |
| Q |
303 |
ctaaactctttccatatgatgcactacgatttggggaaggtgcctcaaagttttttcaagatgaaactgattttaggcgccaaatcaatattggggaagg |
402 |
Q |
| |
|
| ||||||||| ||||||||| |||| |||||||||||||||||||||| |||||| || | ||| |||| | || ||||||||| ||||| |
|
|
| T |
10026598 |
tcctgccatttccatatcatgcactacaattt--ggaaggtgcctcaaagttttttgaagatggaattaattctagggccgaactcaatattgatgaagg |
10026695 |
T |
 |
| Q |
403 |
catcaaagaaaat |
415 |
Q |
| |
|
||| |||||||| |
|
|
| T |
10026696 |
tatcgaagaaaat |
10026708 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 126 - 415
Target Start/End: Original strand, 8710321 - 8710613
Alignment:
| Q |
126 |
gcattgttatttgtgaaccaaatcaaagtgaagccaagggtatgaagaattttttaataaataataatgatgaagaatctaacattgatcataaaggaaa |
225 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| ||||||| || || ||| ||| |||||||||||||| ||| ||| | ||| | |||||| ||| |
|
|
| T |
8710321 |
gcattgttatttttgaaccaaaggaaagtgaaatggagggtatcaatgatgtttcaatcaataataatgatgatgaagctagcgttgtttataaagaaaa |
8710420 |
T |
 |
| Q |
226 |
agggtatttgattcnnnnnnntgag---ttagattcttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgat |
322 |
Q |
| |
|
|||| || |||||| |||| ||||| | |||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
8710421 |
agggaatatgattcaaacaaatgaggagttagaattttcatcctctggggaagaagaagtcctagcatttgcatcacatttcctaccctttccatatgat |
8710520 |
T |
 |
| Q |
323 |
gcactacgatttggggaaggtgcctcaaagttttttcaagatgaaactgattttaggcgccaaatcaatattggggaaggcatcaaagaaaat |
415 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||| || || |||||||| ||||| | || ||||||||| |||||||| |||||||| |
|
|
| T |
8710521 |
tcactacaatttgggaaaggtgcctcaaagttatttacaggtggaactgattctaggctcgaactcaatattgatgaaggcattgaagaaaat |
8710613 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 329
Target Start/End: Complemental strand, 20523964 - 20523693
Alignment:
| Q |
60 |
ttccaaaagtaaatgaggatccaaaagcaaatgtggcaagcataaaaaaggctaactcagtgggcggcattgttatttgtgaaccaaatcaaagtgaagc |
159 |
Q |
| |
|
|||||||| |||| |||| |||||||| |||||| |||||||||||| |||| | |||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
20523964 |
ttccaaaaataaaggaggtcccaaaagctaatgtgatgagcataaaaaagactaatttagtgggcggcattgttatctgtgaaccaaaggaaagtgaaat |
20523865 |
T |
 |
| Q |
160 |
caagggtatgaagaattttttaataaataataatgatgaagaatctaacattgatcataaaggaaaagggtatttgattcnnnnnnntg---agttagat |
256 |
Q |
| |
|
||||||| || ||| ||| ||| |||||||||||||| ||| ||| | ||| | |||| |||||| || || ||||| || ||||||| |
|
|
| T |
20523864 |
ggagggtatcaataatgtttcaatcaataataatgatgatgaagctagcgttgttgataatggaaaatggaatacgattcaaacaaatgagaagttaga- |
20523766 |
T |
 |
| Q |
257 |
tcttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgatgcactac |
329 |
Q |
| |
|
|||||||||||| |||||||||| | ||| |||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
20523765 |
acttcatcctctttggaagaagaaatcttagaatttgcatcacatttcctactctttccacatgatgcactac |
20523693 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 20523465 - 20523615
Alignment:
| Q |
4 |
aggtagaaaatctaagtcatgtgtggatgaatcgtgcaaacatgttgaaaaggtagttccaaaagtaaatgaggatccaaaagcaaatgtggcaagcata |
103 |
Q |
| |
|
|||||||||| |||| || |||||| ||| |||||||||| | ||||| | | |||||||| |||| |||| |||||||||||||||| |||||| |
|
|
| T |
20523465 |
aggtagaaaacctaaatctcctgtggaagaagggtgcaaacatatagaaaatggatttccaaaaataaaggaggttccaaaagcaaatgtgatgagcata |
20523564 |
T |
 |
| Q |
104 |
aaaaaggctaactcagtgggcggcattgttatttgtgaaccaaatcaaagtgaa |
157 |
Q |
| |
|
|||||| || | |||||| || |||||||||||| || |||| |||||||| |
|
|
| T |
20523565 |
aaaaagact---ttagtgggtggtattgttatttgtaaatcaaaggaaagtgaa |
20523615 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 4 - 415
Target Start/End: Original strand, 3579035 - 3579450
Alignment:
| Q |
4 |
aggtagaaaatctaagtcatgtgtggatgaatcgtgcaaacatgttgaaaag-gtagttccaaaagtaaatgaggatccaaaagcaaatgtggcaagcat |
102 |
Q |
| |
|
|||||||||| |||| || | |||||| ||| |||||||||| ||||||| | | |||||||| |||| |||| |||||||| |||||| ||||| |
|
|
| T |
3579035 |
aggtagaaaacctaaatcgtctgtggaagaagggtgcaaacatattgaaaaatggatttccaaaaataaaggagggcccaaaagctaatgtgatgagcat |
3579134 |
T |
 |
| Q |
103 |
aaaaaaggctaactcagtgggcggcattgttatttgtgaaccaaatcaaagtgaagccaagggtatgaagaattttttaataaataataatgatgaagaa |
202 |
Q |
| |
|
|| |||| |||| | |||||| | |||| |||| ||||||||||| |||||||| |||||||||| ||| ||| ||| ||||||| |||||| ||| |
|
|
| T |
3579135 |
aagaaagactaatttagtgggtgacattcttatctgtgaaccaaaggaaagtgaaatagagggtatgaacaatgtttcaatcaataatagtgatgacgaa |
3579234 |
T |
 |
| Q |
203 |
tctaacattgatcataaaggaaaagggtatttgattcnnnnnnntgag---ttagattcttcatcctcttcggaagaagaagacctagcatttgcatcac |
299 |
Q |
| |
|
||| | ||| | ||||||||||||| || |||||| |||| ||||| |||||||||| || ||||||| ||| | ||| |||| ||| || |
|
|
| T |
3579235 |
gctagcgttgttgataaaggaaaaggaaatatgattcaaacaaatgaggagttagaatcttcatcctatttggaagaaaaagtcttagaattttcattac |
3579334 |
T |
 |
| Q |
300 |
attctaaactctttccatatgatgcactacgatttggggaaggtgcctcaaagttttttcaagatgaaactgattttaggcgccaaatcaatattgggga |
399 |
Q |
| |
|
| | |||||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| |||| ||| ||||| | || |||||||||| || |
|
|
| T |
3579335 |
agttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaagttttttgaagatagaactcattctaggctcgaactcaatattggtga |
3579434 |
T |
 |
| Q |
400 |
aggcatcaaagaaaat |
415 |
Q |
| |
|
||| ||| |||||||| |
|
|
| T |
3579435 |
aggtatcgaagaaaat |
3579450 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 4 - 415
Target Start/End: Complemental strand, 3580071 - 3579659
Alignment:
| Q |
4 |
aggtagaaaatctaagtcatgtgtggatgaatcgtgcaaacatgttgaaaaggtagttccaaaagtaaatgaggatccaaaagcaaatgtggcaagcata |
103 |
Q |
| |
|
||||||||||||||| || | |||||| ||| |||||||||| | ||||| | |||| ||| ||| ||| |||||||||||||||| |||||| |
|
|
| T |
3580071 |
aggtagaaaatctaaatcgtctgtggaagaagggtgcaaacatatagaaaatagatttcctaaaacaaagaagggtccaaaagcaaatgtgatgagcata |
3579972 |
T |
 |
| Q |
104 |
aaaaaggctaactcagtgggcggcattgttatttgtgaaccaaatcaaagtgaagccaagggtatgaagaattttttaataaataataatgatgaagaat |
203 |
Q |
| |
|
|||||| |||| | |||||| | |||||||||||||||||||| |||||||| ||||||| || ||| ||| ||| |||||||||||||| ||| |
|
|
| T |
3579971 |
aaaaagactaatttagtgggtagtattgttatttgtgaaccaaaggaaagtgaaatagagggtatcaataatgtttaaatcaataataatgatgatgaag |
3579872 |
T |
 |
| Q |
204 |
ctaacattgatcataaaggaaaagggtatttgattcnnnnnnntgag---ttagattcttcatcctcttcggaagaagaagacctagcatttgcatcaca |
300 |
Q |
| |
|
||| | ||| | |||||| ||||||| || |||||| |||| ||||| |||||||||| || |||||| |||| | ||| ||||||||||| |
|
|
| T |
3579871 |
ctagcgttgttgataaagaaaaagggaatatgattcaaacaaatgaggagttagaatcttcatcctatttggaagatgaagtcatagattttgcatcaca |
3579772 |
T |
 |
| Q |
301 |
ttctaaactctttccatatgatgcactacgatttggggaaggtgcctcaaagttttttcaagatgaaactgattttaggcgccaaatcaatattggggaa |
400 |
Q |
| |
|
|| || |||| |||||||||||||| ||||||| |||||||||| || ||||| |||||| |||||||| ||||| | || |||||||||| ||| |
|
|
| T |
3579771 |
tttcctacccttttcatatgatgcactataatttgggaaaggtgcctc--agatttttgaagatggaactgattctaggctcgaactcaatattggtgaa |
3579674 |
T |
 |
| Q |
401 |
ggcatcaaagaaaat |
415 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
3579673 |
ggtatggaagaaaat |
3579659 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1353 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold1353
Description:
Target: scaffold1353; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 249 - 415
Target Start/End: Complemental strand, 1106 - 940
Alignment:
| Q |
249 |
agttagattcttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgatgcactacgatttggggaaggtgcctc |
348 |
Q |
| |
|
||||||| ||||||| ||||| | ||| |||| ||||||||||| |||||||| || |||| ||||||||||||||| |||||||||||||||| | |
|
|
| T |
1106 |
agttagaatcttcattctctttgaaaggggaagtcctagcatttgaatcacatttcctaccctttgcatatgatgcactacaatttggggaaggtgccac |
1007 |
T |
 |
| Q |
349 |
aaagttttttcaagatgaaactgattttaggcgccaaatcaatattggggaaggcatcaaagaaaat |
415 |
Q |
| |
|
|||||||||| |||||| |||||||| | ||| | || ||||||||| ||||| |||||||||||| |
|
|
| T |
1006 |
aaagttttttgaagatggaactgattctcggctcgaactcaatattgttgaaggtatcaaagaaaat |
940 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1353; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 258 - 374
Target Start/End: Original strand, 742 - 858
Alignment:
| Q |
258 |
cttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgatgcactacgatttggggaaggtgcctcaaagttttt |
357 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
742 |
cttcatcctctttggaagaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactacaaattgggttaggtgcctcaaagttttt |
841 |
T |
 |
| Q |
358 |
tcaagatgaaactgatt |
374 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
842 |
tgaagatggaactgatt |
858 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1352 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold1352
Description:
Target: scaffold1352; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 249 - 415
Target Start/End: Original strand, 884 - 1050
Alignment:
| Q |
249 |
agttagattcttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgatgcactacgatttggggaaggtgcctc |
348 |
Q |
| |
|
||||||| ||||||| ||||| | ||| |||| ||||||||||| |||||||| || |||| ||||||||||||||| |||||||||||||||| | |
|
|
| T |
884 |
agttagaatcttcattctctttgaaaggggaagtcctagcatttgaatcacatttcctaccctttgcatatgatgcactacaatttggggaaggtgccac |
983 |
T |
 |
| Q |
349 |
aaagttttttcaagatgaaactgattttaggcgccaaatcaatattggggaaggcatcaaagaaaat |
415 |
Q |
| |
|
|||||||||| |||||| |||||||| | ||| | || ||||||||| ||||| |||||||||||| |
|
|
| T |
984 |
aaagttttttgaagatggaactgattctcggctcgaactcaatattgttgaaggtatcaaagaaaat |
1050 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1352; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 258 - 374
Target Start/End: Complemental strand, 1248 - 1132
Alignment:
| Q |
258 |
cttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgatgcactacgatttggggaaggtgcctcaaagttttt |
357 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
1248 |
cttcatcctctttggaagaagaaatcctagaatttgcatcacatttcctactctttccacatgatgcactacaaattgggttaggtgcctcaaagttttt |
1149 |
T |
 |
| Q |
358 |
tcaagatgaaactgatt |
374 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
1148 |
tgaagatggaactgatt |
1132 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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