View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14456_high_3 (Length: 492)
Name: NF14456_high_3
Description: NF14456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14456_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Complemental strand, 3471035 - 3470570
Alignment:
| Q |
16 |
gaagatacaagaacaagtttcacaggctctctctatcatggtttgcaccaaaagggcatcaatgttttcatagatgatgaggagcttaggagaggagaac |
115 |
Q |
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| T |
3471035 |
gaagatacaagaacaagtttcacaggctctctctatcatggtttgcaccaaaagggcatcaatgttttcatagatgatgaggagcttaggagaggagaac |
3470936 |
T |
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| Q |
116 |
aaatatctccatctcttcttacagccattgaagaatcaagaatttctatcattgtgttttctcagaactatgcaaattcaacttggtgtcttgatgagct |
215 |
Q |
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| T |
3470935 |
aaatatctccatctcttcttacagccattgaagaatcaagaatttctatcattgtgttttctcagaactatgcaaattcaacttggtgtcttgatgagct |
3470836 |
T |
|
| Q |
216 |
tgctaagattcttgaatgttggaaaacaaaaggacagttagtttttccagttttttactatgttgatccttcttctgtaaggcatcaaagaggaagtttt |
315 |
Q |
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| T |
3470835 |
tgctaagattcttgaatgttggaaaacaaaaggacagttagtttttccagttttttactatgttgatccttcttctgtaaggcatcaaagaggaagtttt |
3470736 |
T |
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| Q |
316 |
ggaacagcaatggctaaacatgaagtcacattcaaggatgatgttgaaaggttgaagaaatggaaaaaagccttgtttgatgcagccaatttttcaggtt |
415 |
Q |
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| T |
3470735 |
ggaacagcaatggctaaacatgaagtcacattcaaggatgatgttgaaaggttgaagaagtggaaaaaagccttgtttgatgcagccaatttttcaggtt |
3470636 |
T |
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| Q |
416 |
ggagcttagaaaatgggtatgtaacaatatattatatatctttcttccttttgtttatgtacctat |
481 |
Q |
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| T |
3470635 |
ggagcttagaaaatgggtatgtaacaatatattatatatctttcttccttttgtttatgtacctat |
3470570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 40334101 - 40334193
Alignment:
| Q |
142 |
attgaagaatcaagaatttctatcattgtgttttctcagaactatgcaaattcaacttggtgtcttgatgagcttgctaagattcttgaatgt |
234 |
Q |
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| T |
40334101 |
attgaagcatcaagactttcgattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgt |
40334193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 40387379 - 40387471
Alignment:
| Q |
142 |
attgaagaatcaagaatttctatcattgtgttttctcagaactatgcaaattcaacttggtgtcttgatgagcttgctaagattcttgaatgt |
234 |
Q |
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| T |
40387379 |
attgaagcatcaagactttcgattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgt |
40387471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 40377134 - 40377226
Alignment:
| Q |
142 |
attgaagaatcaagaatttctatcattgtgttttctcagaactatgcaaattcaacttggtgtcttgatgagcttgctaagattcttgaatgt |
234 |
Q |
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| T |
40377134 |
attgaagcaacaagactttcaattattgttttgtctgaaaactatgcaaattccacatggtgtcttgatgaacttgtgaagattcttgaatgt |
40377226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 40278019 - 40278078
Alignment:
| Q |
181 |
aactatgcaaattcaacttggtgtcttgatgagcttgctaagattcttgaatgttggaaa |
240 |
Q |
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| T |
40278019 |
aactatgcaagttccacatggtgtcttgatgaacttgtcaagattcttgaatgtaggaaa |
40278078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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