View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14456_low_1 (Length: 620)

Name: NF14456_low_1
Description: NF14456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14456_low_1
NF14456_low_1
[»] chr3 (6 HSPs)
chr3 (144-387)||(49016123-49016365)
chr3 (144-333)||(26250498-26250687)
chr3 (386-471)||(39666035-39666120)
chr3 (15-77)||(38270103-38270165)
chr3 (389-471)||(43615085-43615167)
chr3 (166-264)||(35492413-35492513)
[»] chr7 (5 HSPs)
chr7 (143-387)||(42011308-42011551)
chr7 (392-471)||(28211217-28211296)
chr7 (389-471)||(14648031-14648113)
chr7 (528-578)||(28211353-28211403)
chr7 (570-613)||(28211410-28211453)
[»] chr4 (11 HSPs)
chr4 (144-387)||(48512634-48512876)
chr4 (149-387)||(50499783-50500020)
chr4 (144-387)||(52489269-52489511)
chr4 (143-376)||(31417204-31417434)
chr4 (144-387)||(29819423-29819670)
chr4 (144-387)||(48474109-48474351)
chr4 (146-387)||(53409088-53409334)
chr4 (144-376)||(42477413-42477645)
chr4 (144-376)||(37385007-37385234)
chr4 (130-225)||(20718120-20718215)
chr4 (425-467)||(54804373-54804415)
[»] chr1 (11 HSPs)
chr1 (144-376)||(3154459-3154691)
chr1 (144-370)||(6850840-6851066)
chr1 (138-376)||(29920348-29920585)
chr1 (144-387)||(5055097-5055338)
chr1 (15-104)||(42886470-42886559)
chr1 (389-471)||(8142796-8142878)
chr1 (528-578)||(8142935-8142985)
chr1 (570-613)||(8142992-8143035)
chr1 (138-188)||(29919219-29919269)
chr1 (138-188)||(29920128-29920178)
chr1 (138-188)||(29920238-29920288)
[»] chr6 (2 HSPs)
chr6 (151-387)||(27336118-27336353)
chr6 (151-387)||(27396858-27397093)
[»] chr5 (6 HSPs)
chr5 (160-387)||(32771246-32771471)
chr5 (142-264)||(26305967-26306089)
chr5 (401-471)||(29832896-29832966)
chr5 (389-471)||(18652159-18652241)
chr5 (166-257)||(29538972-29539065)
chr5 (172-212)||(17864592-17864632)
[»] scaffold0006 (1 HSPs)
scaffold0006 (144-372)||(282169-282398)
[»] chr8 (5 HSPs)
chr8 (144-387)||(9233512-9233757)
chr8 (389-471)||(30830445-30830527)
chr8 (389-471)||(6285242-6285324)
chr8 (528-578)||(30830338-30830388)
chr8 (74-104)||(43962878-43962908)
[»] chr2 (2 HSPs)
chr2 (284-387)||(34025410-34025512)
chr2 (166-234)||(34025547-34025615)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 3e-99; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 144 - 387
Target Start/End: Complemental strand, 49016365 - 49016123
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  49016365 ggtggcatttagcttggacctgtgtaactattggtccataatgaaccaatatttataaccattggattatatgtatgcacaataacataatgcacctcac 49016266  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 343  Q
    | ||||||||||||| ||||| |||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49016265 acgtctaattatttcatttactctttccaaaatattttcctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacc 49016166  T
Q  344 catcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||| |||||||||||||||||||||||||| ||||||||||||    
T  49016165 catcattttcgatcaatatttagaatttaat-aatttaacatat 49016123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 144 - 333
Target Start/End: Original strand, 26250498 - 26250687
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    |||||||||| |||| ||| | || || ||||||||||||||||||||||||||||||||||| ||||| || ||||||||| || ||||||||||||||    
T  26250498 ggtggcattttgcttggacttatgcaagtattggtccataatggaccaatatttataaccattagattatatatatgcacaataatataatgcacctcac 26250597  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttc 333  Q
    | ||||||||||||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  26250598 acgtctaattatttcctttactctttccaaactattttcctgctttctttttctttctgtaatttcaacattcaatcttcaattgttttc 26250687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 386 - 471
Target Start/End: Complemental strand, 39666120 - 39666035
Alignment:
Q  386 atttgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    |||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39666120 atttgctccagtacaaaattgctccagtttccagttaatgtaaccgatgtgtgacatgtggcagggtcaaatttcaacggatcaga 39666035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 38270103 - 38270165
Alignment:
Q  15 gatgatgatgcataggttatgcacagacacagaaacacaccctttgcacaattatgttaaaca 77  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  38270103 gatgatgatgcaaaggttatacacagacaaagaaacacaccctttgcacaattatgttaaaca 38270165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 43615085 - 43615167
Alignment:
Q  389 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    ||||||| ||||||||| |||||||| ||  |||||||||| ||||  |||||||||||||||||| |||| |||||||||||    
T  43615085 tgctccagtacaaaattactccagttcccagttaatgtaactgatgcgtgacatgtggcagggtcagattttaacggatcaga 43615167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 35492513 - 35492413
Alignment:
Q  166 tgtaaatattggtccataatggaccaatatttataac--cattggattacatgtatgcacaagaacataatgcacctcacatgtctaattatttccttta 263  Q
    ||||| |||||||||||||| || | |||||||||    |||||||||| ||||| |||||| |||| |||  ||||||||  |||||||||||||||||    
T  35492513 tgtaagtattggtccataatagatctatatttatatagtcattggattatatgtaagcacaataacacaatatacctcacacatctaattatttccttta 35492414  T
Q  264 c 264  Q
    |    
T  35492413 c 35492413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 2e-97; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 143 - 387
Target Start/End: Complemental strand, 42011551 - 42011308
Alignment:
Q  143 tggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctca 242  Q
    |||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||     
T  42011551 tggtggcatttagcttggacctgtataagtattggtccataatggaccaatatttataaccattggattatatgtatgcacaataacataatgcacctct 42011452  T
Q  243 catgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaac 342  Q
    || ||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||    
T  42011451 cacgtctaattatttcttttactctttccaaactattttcctgccttctttttttttctgtaatttcaacattcaatcttcaattattttcaataaaaac 42011352  T
Q  343 ccatcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  42011351 ccatcgttttcgatcaatatttagaatttaat-aatttaacatat 42011308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 392 - 471
Target Start/End: Original strand, 28211217 - 28211296
Alignment:
Q  392 tccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  28211217 tccattacaaaattgctccaatttcctgttaatgtaaccgatgtgtgacatgtggcagggtcaaattttaacggatcaga 28211296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 14648031 - 14648113
Alignment:
Q  389 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    ||||||| |||||||||||||||||| ||  |||||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  14648031 tgctccagtacaaaattgctccagttcccagttaatgtaactgatgtgtgacatgtggcagggtcagatttcaacggatcaga 14648113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 28211353 - 28211403
Alignment:
Q  528 gtgcatgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 578  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  28211353 gtgcacgtttctgctctccttcttcactcctctccgtcgtcactcttctcc 28211403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 570 - 613
Target Start/End: Original strand, 28211410 - 28211453
Alignment:
Q  570 ctcctctccttcatcttcttcgttggtacgccgccgttcatctc 613  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  28211410 ctcctctccttcatcttcttcgttagtacgccgccgttcttctc 28211453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 7e-97; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 144 - 387
Target Start/End: Original strand, 48512634 - 48512876
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    |||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||    
T  48512634 ggtgacatttagcttggacctgtgtaagtattggtccataatggaccaatatttataaccattgaattatatgtatgcacaataacataatgcacctcac 48512733  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 343  Q
    | || ||||||||| |||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48512734 aagtttaattattttctttactcttttcaaactattttcctaccgtctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacc 48512833  T
Q  344 catcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  48512834 catcgttttcgatcaatatttagaatttaat-aatttaacatat 48512876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 149 - 387
Target Start/End: Original strand, 50499783 - 50500020
Alignment:
Q  149 catttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtc 248  Q
    |||||||||| ||||| ||||| ||||||||||||||  |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |||    
T  50499783 catttagcttggacctgtgtaagtattggtccataataaaccaatatttataaccattgaattatatgtatgcacaataacataatgcacctcacacgtc 50499882  T
Q  249 taattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcg 348  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  50499883 taattattttctttactcttttcaaactattttcctgccttctttttctttctgtaatttcaacattcaatcttcaattgtttttaataaaaatccatcg 50499982  T
Q  349 ttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  50499983 ttttcgatcaatatttagaatttaat-aatttaacatat 50500020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 144 - 387
Target Start/End: Complemental strand, 52489511 - 52489269
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||  |||||||| |||| ||||||| |||||||||||||||||    
T  52489511 ggtggcatttagcttggacctgtgtaagtattggtccataatggatcaatatttataactgttggattatatgtgtgcacaataacataatgcacctcac 52489412  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttct-ttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaac 342  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  52489411 acgtctaattatttcctttactcttttcaaactattttcctgccttcttttttatttctgtaatttcaacactcaatcttcaattgttttcaataaaaac 52489312  T
Q  343 ccatcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||    
T  52489311 ccatcgttttcgatcaatatttagaa-ttaat-aatttaacatat 52489269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 143 - 376
Target Start/End: Complemental strand, 31417434 - 31417204
Alignment:
Q  143 tggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctca 242  Q
    |||||||||||||||| ||  | ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31417434 tggtggcatttagcttggatatgtgtaagtattggtctataatggaccaatatttataaccattggattatatgtatgcacaataacataatgcacctca 31417335  T
Q  243 catgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaac 342  Q
     | |||||| |||||||||||| |||| ||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31417334 tacgtctaactatttcctttactctttccaaactattttcctgc---ctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaac 31417238  T
Q  343 ccatcgttttcgatcaatatttagaatttaataa 376  Q
    | ||  ||||||||||||||||||||||||||||    
T  31417237 ctataattttcgatcaatatttagaatttaataa 31417204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 144 - 387
Target Start/End: Original strand, 29819423 - 29819670
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    ||||||||||||||| ||||| |||||  |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  29819423 ggtggcatttagcttggacctgtgtaagcattggtccataatgaaccaatatttataaccattggattatatgtatgcacaataacataatgcacctcac 29819522  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgcc-----ttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataa 338  Q
    | ||||||||||||||||||   |||  ||||||||||||| ||     || ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  29819523 acgtctaattatttcctttattttttctaaactattttcctacctttttttttttttttttttgtaatttcaacattcaatcttcaattgttttcaataa 29819622  T
Q  339 aaacccatcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  29819623 aaactcatcgttttcgatcaatatttagaatttaat-aatttaacatat 29819670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 144 - 387
Target Start/End: Complemental strand, 48474351 - 48474109
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    ||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||| |||| || ||| ||||| |||||||||||||||||    
T  48474351 ggtggcatttagcttggacatgtgtaaatattggtcaataatggaccaatatttataaccattgaattatatatatacacaataacataatgcacctcac 48474252  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 343  Q
    | ||||||||||||||||| | ||||||||| ||||||  | |||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||    
T  48474251 acgtctaattatttcctttgctcttttcaaattatttttttaccttctttttctttctataattccaacattcaatcttcaattgtttttaataaaaacc 48474152  T
Q  344 catcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||    
T  48474151 catcattttcgatcaatatttaaaatttaat-aatttaacatat 48474109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 146 - 387
Target Start/End: Original strand, 53409088 - 53409334
Alignment:
Q  146 tggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacat 245  Q
    ||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||     
T  53409088 tggcatttagcttggacctatgtaagtattggtctataatggaccaatatttataaccattggattatatatatgcacaataacataatgcacctcacac 53409187  T
Q  246 gtctaattatttcctttacccttttcaaactattttcctgccttctttttcttt------gtgtaatttcaacattcaatcttcaattgttttcaataaa 339  Q
    || |||||||||| ||||  ||||  ||||||||||| |||||||||||| |||       |||||||||||||||||||||||||||||||||||||||    
T  53409188 gtttaattatttcttttattctttctaaactattttcttgccttcttttttttttctctcttgtaatttcaacattcaatcttcaattgttttcaataaa 53409287  T
Q  340 aacccatcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  53409288 aacccatcgttttcaatcaatatttagaatttaat-aatttaacatat 53409334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 144 - 376
Target Start/End: Original strand, 42477413 - 42477645
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||| ||| ||||||||    
T  42477413 ggtgtcatttagcttggacctgtgtaaatattggtccataatggaccaatatttataaccattggattatatataagcacaataacacaatacacctcac 42477512  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 343  Q
    |  ||||||||||| |||||| || |  ||| || |||| |||||||| | ||||| |||||||| || |||||||||||||||||| |||||  ||||     
T  42477513 acatctaattattttctttactctctctaaaatagtttcttgccttctctctctttctgtaattttaatattcaatcttcaattgttatcaatttaaact 42477612  T
Q  344 catcgttttcgatcaatatttagaatttaataa 376  Q
    |||||||||| ||||||||||||||||||||||    
T  42477613 catcgttttcaatcaatatttagaatttaataa 42477645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 144 - 376
Target Start/End: Original strand, 37385007 - 37385234
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |||| || || ||||||  ||| |||  | |||||    
T  37385007 ggtgtcatttagcttggacctgtgtaaatattggtccataatggaccaatatttataatcattgaattatatataagcacaatgacacaatatatctcac 37385106  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 343  Q
    || | |||||||||  ||||| || || ||| || |||| |||||||| | ||||| |||||||| || |||||||    | |||||||||||  ||||     
T  37385107 atatttaattattt-ttttactctctttaaaatagtttcttgccttctctctctttatgtaattttaatattcaat----atttgttttcaatttaaact 37385201  T
Q  344 catcgttttcgatcaatatttagaatttaataa 376  Q
    |||||||||| ||||||||||||||||||||||    
T  37385202 catcgttttcaatcaatatttagaatttaataa 37385234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 20718215 - 20718120
Alignment:
Q  130 aagtatatgtttgtggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaa 225  Q
    ||||||||||||   ||| |||||||| |  |||| ||||| ||||| ||||||||| ||||||||||||| ||||||||||  ||||| ||||||    
T  20718215 aagtatatgtttagagtgccatttagcctaaacctgtgtaagtattgatccataatgaaccaatatttatagccattggattgtatgtaagcacaa 20718120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 467
Target Start/End: Complemental strand, 54804415 - 54804373
Alignment:
Q  425 gtaaccgatgtatgacatgtggcagggtcaaatttcaacggat 467  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||    
T  54804415 gtaaccgatgtgtgatatgtggcagggtcagatttcaacggat 54804373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 4e-95; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 144 - 376
Target Start/End: Original strand, 3154459 - 3154691
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  3154459 ggtggcatttagcttggacatttgtaagtattggtccataatggaccaatatttataaccactggattatatgtatgcacaataacataatgcacctcac 3154558  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 343  Q
    | |||||||||||||||||||  ||| |||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3154559 acgtctaattatttcctttactttttccaaaatatgtttctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacc 3154658  T
Q  344 catcgttttcgatcaatatttagaatttaataa 376  Q
    |||||||||||||||||||||||||||||||||    
T  3154659 catcgttttcgatcaatatttagaatttaataa 3154691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 144 - 370
Target Start/End: Complemental strand, 6851066 - 6850840
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||    
T  6851066 ggtggcatttagcttggacctgtgtaagtattggtccataatggaccaatatttataaccattggattatacgtgtgcacaataacataatgcacctcac 6850967  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 343  Q
    | || |||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||     
T  6850966 acgtttaattatttcctttactctttttaaactatttttctgccttctttttctttctgtaatttcaacattcaatcttcaattattttcaataaaaact 6850867  T
Q  344 catcgttttcgatcaatatttagaatt 370  Q
    |||||||||||||||||||||||||||    
T  6850866 catcgttttcgatcaatatttagaatt 6850840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 138 - 376
Target Start/End: Original strand, 29920348 - 29920585
Alignment:
Q  138 gtttgtggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgca 237  Q
    ||||| |||| |||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||||| || || |||||| |||||||| ||    
T  29920348 gtttgaggtgccatttagcttggatctatgtaaatattggtccataatggatcaatatttataaccattcgattatatataagcacaataacataataca 29920447  T
Q  238 cctcacatgtctaattatttccttt-acccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaat 336  Q
    |||||||  ||||||| |||  ||| || || |  ||| || |||| |||||||| | ||||| ||||||||||| ||||||||||||||||||||||||    
T  29920448 cctcacacatctaattttttttttttactctct--aaaatagtttcttgccttctctctctttctgtaatttcaatattcaatcttcaattgttttcaat 29920545  T
Q  337 aaaaacccatcgttttcgatcaatatttagaatttaataa 376  Q
      |||| |||||||||| ||||||||||||||||||||||    
T  29920546 ttaaactcatcgttttcaatcaatatttagaatttaataa 29920585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 144 - 387
Target Start/End: Original strand, 5055097 - 5055338
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    |||| |||||||| | ||| | ||||| | || ||||||||||||||||||||||||  |||||||||| ||||| |||||| |||| |||  ||||||     
T  5055097 ggtgtcatttagcctggacttatgtaagtgttagtccataatggaccaatatttatagtcattggattatatgtaagcacaataacacaatatacctcaa 5055196  T
Q  244 atgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacc 343  Q
    |  ||||| ||||| |||||  || |  ||| ||||| | |||||||| | ||||| |||||||||| ||||||||||||||||||||||||| |||| |    
T  5055197 acatctaaatattttctttattctctctaaa-tatttccttgccttctctctctttctgtaatttcagcattcaatcttcaattgttttcaatgaaaatc 5055295  T
Q  344 catcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||    
T  5055296 catcgttttcaatcaatatttagagtttaat-aatttaacatat 5055338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 42886470 - 42886559
Alignment:
Q  15 gatgatgatgcataggttatgcacagacacagaaacacaccctttgcacaattatgttaaacaccggttcttcttctcatcaccaatcag 104  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42886470 gatgatgatgcataggttatacacagacacataaacacaccctttgcacaattatgttaaacgccggttcttcttctcatcaccaatcag 42886559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 8142796 - 8142878
Alignment:
Q  389 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8142796 tgctccattacaaaattgctccagtttcctgttaatgtaaccgatgtgtgacatgtggcagggtcaaatttcaacggatcaga 8142878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 8142935 - 8142985
Alignment:
Q  528 gtgcatgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 578  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8142935 gtgcacgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 8142985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 613
Target Start/End: Original strand, 8142992 - 8143035
Alignment:
Q  570 ctcctctccttcatcttcttcgttggtacgccgccgttcatctc 613  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||    
T  8142992 ctcctctccttcatcttcttcgttagtacgtcgccgttcttctc 8143035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 29919219 - 29919269
Alignment:
Q  138 gtttgtggtggcatttagctttgacctttgtaaatattggtccataatgga 188  Q
    ||||| |||| |||||||||| || || |||||||||||||||||||||||    
T  29919219 gtttgaggtgccatttagcttggatctatgtaaatattggtccataatgga 29919269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 29920128 - 29920178
Alignment:
Q  138 gtttgtggtggcatttagctttgacctttgtaaatattggtccataatgga 188  Q
    ||||| |||| |||||||||| || || |||||||||||||||||||||||    
T  29920128 gtttgaggtgccatttagcttggatctatgtaaatattggtccataatgga 29920178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 29920238 - 29920288
Alignment:
Q  138 gtttgtggtggcatttagctttgacctttgtaaatattggtccataatgga 188  Q
    ||||| |||| |||||||||| || || |||||||||||||||||||||||    
T  29920238 gtttgaggtgccatttagcttggatctatgtaaatattggtccataatgga 29920288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 6e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 151 - 387
Target Start/End: Complemental strand, 27336353 - 27336118
Alignment:
Q  151 tttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtcta 250  Q
    |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||     
T  27336353 tttagcttggacctatgtaagtattggttcataatggaccaatatttataaccattggattatatgtatgcacaataacataatgcactttacatgtctg 27336254  T
Q  251 attatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgtt 350  Q
    ||||||| |||||| ||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27336253 attattttctttactctttttaaaatatttttctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcatt 27336154  T
Q  351 ttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||||||||||||||||||||||| ||||||||||||    
T  27336153 ttcgatcaatatttagaatttaat-aatttaacatat 27336118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 151 - 387
Target Start/End: Complemental strand, 27397093 - 27396858
Alignment:
Q  151 tttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtcta 250  Q
    |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||     
T  27397093 tttagcttggacctatgtaagtattggttcataatggaccaatatttataaccattggattatatgtatgcacaataacataatgcactttacatgtctg 27396994  T
Q  251 attatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgtt 350  Q
    ||||||| |||||| ||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27396993 attattttctttactctttttaaaatatttttctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcatt 27396894  T
Q  351 ttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||||||||||||||||||||||| ||||||||||||    
T  27396893 ttcgatcaatatttagaatttaat-aatttaacatat 27396858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 160 - 387
Target Start/End: Original strand, 32771246 - 32771471
Alignment:
Q  160 gacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtctaattatttcc 259  Q
    ||||| ||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  32771246 gacctgtgtaagtattggtccataatggaccaatatttataat-attagattatatgtatgcacaataacataatgcacatcacacgtttaattatttcc 32771344  T
Q  260 tttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgttttcgatcaa 359  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32771345 tttactctttccaaactattttcctgccttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgttttcgatcaa 32771444  T
Q  360 tatttagaatttaataaatttaacatat 387  Q
    ||||||||||||||| ||||||||||||    
T  32771445 tatttagaatttaat-aatttaacatat 32771471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 26305967 - 26306089
Alignment:
Q  142 gtggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctc 241  Q
    |||||| |||||||| | ||| | ||||| ||||||||||||||||| |||||||||||  |||||||||| ||||| |||||| |||| |||  |||||    
T  26305967 gtggtgccatttagcctggacttgtgtaagtattggtccataatggatcaatatttatagtcattggattatatgtaagcacaataacacaatatacctc 26306066  T
Q  242 acatgtctaattatttcctttac 264  Q
    |||  ||||||||||| ||||||    
T  26306067 acacatctaattattttctttac 26306089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 401 - 471
Target Start/End: Original strand, 29832896 - 29832966
Alignment:
Q  401 aaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||    
T  29832896 aaattgctccagtttcctgttaatgtaactgatgtgtgacatgtggcagggtgagatttcaacggatcaga 29832966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 389 - 471
Target Start/End: Complemental strand, 18652241 - 18652159
Alignment:
Q  389 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    ||||||| |||||||||||||||||| |   |||||||||| ||||  |||||||||||||||||||||||||||| ||||||    
T  18652241 tgctccagtacaaaattgctccagttcctagttaatgtaactgatgcgtgacatgtggcagggtcaaatttcaacgaatcaga 18652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 29539065 - 29538972
Alignment:
Q  166 tgtaaatattggtccataatggaccaata--tttataaccattggattacatgtatgcacaagaacataatgcacctcacatgtctaattattt 257  Q
    ||||| |||||||||||||||||||||||  |||||| ||||||||||| ||| | |||||| |||| ||| |||||||||  |||||||||||    
T  29539065 tgtaagtattggtccataatggaccaatatttttatagccattggattatatgcaagcacaataacacaatacacctcacacatctaattattt 29538972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 17864592 - 17864632
Alignment:
Q  172 tattggtccataatggaccaatatttataaccattggatta 212  Q
    ||||||||||||||||| ||| ||||||| |||||||||||    
T  17864592 tattggtccataatggatcaaaatttatagccattggatta 17864632  T

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Target: scaffold0006 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 144 - 372
Target Start/End: Original strand, 282169 - 282398
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataatgcacctcac 243  Q
    ||||||||||||||| ||||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||    
T  282169 ggtggcatttagcttggacctgtgtaagtattggttcataatagaccaatatttataaccattagattatatgtatgcacaataatataatgcacctcac 282268  T
Q  244 atgtctaatt-atttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaac 342  Q
    | |||||||| ||||| ||||| |||| |||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  282269 acgtctaatttatttcttttactctttccaaaatatttttctgtcttctttttctttctgtaatttcaacattcaatcttcaattgttttcaataaaaac 282368  T
Q  343 ccatcgttttcgatcaatatttagaattta 372  Q
     |||||||||||||||||||||||||||||    
T  282369 tcatcgttttcgatcaatatttagaattta 282398  T

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Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 144 - 387
Target Start/End: Complemental strand, 9233757 - 9233512
Alignment:
Q  144 ggtggcatttagctttgacctttgtaaatattggtccataatg-----gaccaatatttataaccattggattacatgtatgcacaagaacataatgcac 238  Q
    ||||||||||||||| ||| | ||||| ||||||||||||||      |||||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  9233757 ggtggcatttagcttggacttgtgtaagtattggtccataatataatcgaccaatatttataaccattggattatatgtgtgcacaataacataatgcac 9233658  T
Q  239 ctcacatgtctaattatttcctttacccttttcaaactattttcctgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataa 338  Q
    |||||| ||||||||||||||||||| ||||  |||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  9233657 ctcacacgtctaattatttcctttactctttcaaaactatttttctgtcttctttttctttctgtaatttcaacattcaatattcaattg-tttcaataa 9233559  T
Q  339 aaacccatcgttttcgatcaatatttagaatttaataaatttaacatat 387  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  9233558 aaactcatcgttttcgatcaatatttagaa-ttaat-aatttaacatat 9233512  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 389 - 471
Target Start/End: Complemental strand, 30830527 - 30830445
Alignment:
Q  389 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30830527 tgctccattacaaaattgctccagtttcctattaatgtaaccgatgtgtgacatgtggcagggtcaaatttcaacggatcaga 30830445  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 6285242 - 6285324
Alignment:
Q  389 tgctccattacaaaattgctccagtttccttttaatgtaaccgatgtatgacatgtggcagggtcaaatttcaacggatcaga 471  Q
    ||||||| |||||||||||||||||| ||  |||||||||| ||||  |||||||||||||||||| ||||||||||||||||    
T  6285242 tgctccagtacaaaattgctccagttcccagttaatgtaactgatgcgtgacatgtggcagggtcagatttcaacggatcaga 6285324  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 578
Target Start/End: Complemental strand, 30830388 - 30830338
Alignment:
Q  528 gtgcatgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 578  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30830388 gtgcacgtttctgctctccttcttcactcctctccgtcgtcactcctctcc 30830338  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 104
Target Start/End: Original strand, 43962878 - 43962908
Alignment:
Q  74 aacaccggttcttcttctcatcaccaatcag 104  Q
    |||||||||||||||||||||||||||||||    
T  43962878 aacaccggttcttcttctcatcaccaatcag 43962908  T

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Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 34025512 - 34025410
Alignment:
Q  284 tgccttctttttctttgtgtaatttcaacattcaatcttcaattgttttcaataaaaacccatcgttttcgatcaatatttagaatttaataaatttaac 383  Q
    |||||||||| ||||| |||||||||| |||||||| |||||||||||| ||| |||| |||| |||||| ||||||||||||| |||||| ||||||||    
T  34025512 tgccttctttctctttctgtaatttcagcattcaattttcaattgtttttaatgaaaatccattgttttcaatcaatatttagagtttaat-aatttaac 34025414  T
Q  384 atat 387  Q
    ||||    
T  34025413 atat 34025410  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 34025615 - 34025547
Alignment:
Q  166 tgtaaatattggtccataatggaccaatatttataaccattggattacatgtatgcacaagaacataat 234  Q
    ||||| ||||||||||||||||| |||||||||||  |||||||||| || || |||||| |||| |||    
T  34025615 tgtaagtattggtccataatggatcaatatttatagtcattggattatatctaagcacaataacacaat 34025547  T

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