View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14456_low_15 (Length: 220)
Name: NF14456_low_15
Description: NF14456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14456_low_15 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 362535 - 362734
Alignment:
| Q |
21 |
acattaatataaaacatacattattttagatgtcattacataaccaaataaaaacaataactgtctgaaataaacacacaaactgacacaagcaagtatg |
120 |
Q |
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| T |
362535 |
acattaatataaaacatacattattttagatgtcattacataaccaaataaaaacaataactgtctgaaataaacacacaaactgacacaagcaagcatg |
362634 |
T |
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| Q |
121 |
taaaacacattacaattaccaagttaagtctaagaaaattccaacaagctgacatcaaacacacacaccacaacaaacctaatcactattactgtctaaa |
220 |
Q |
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| T |
362635 |
taaaacacattacaatcaccaagttaagtctaagaaaattccaacaagctgacatcaaacacacacaccacaacaaacctaatcactattactgtataaa |
362734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 357204 - 357332
Alignment:
| Q |
20 |
gacattaatataaaacatacattattttagatgtcattacataaccaaataaaaacaataactgtctgaaataaacacacaaa----ctgacacaagcaa |
115 |
Q |
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| T |
357204 |
gacattaatataaaacatatattaatttagatgtcattacataaccaaataaatacaataattgtctgaaataaacacacaaacaagctgacacaagcaa |
357303 |
T |
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| Q |
116 |
gtatgtaaaacacattacaattaccaagt |
144 |
Q |
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| T |
357304 |
gcatataaaacacattagaatcaccaagt |
357332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 60 - 209
Target Start/End: Complemental strand, 41024461 - 41024307
Alignment:
| Q |
60 |
ataaccaaataaaaacaataactgtctgaaataaacacacaaac----tgacacaagcaagtatgtaaaacacattacaattaccaa-gttaagtctaag |
154 |
Q |
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||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||| || |||||||||||||||| ||||| ||||||| || | |
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| T |
41024461 |
ataaccaaataaacacaataattgtcttaaataaacacacaaacaagctgacacaagcaagcatataaaacacattacaatcaccaaagttaagtatagg |
41024362 |
T |
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| Q |
155 |
aaaattccaacaagctgacatcaaacacacacaccacaacaaacctaatcactat |
209 |
Q |
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|||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||| |
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| T |
41024361 |
aaaattccaacaagctgacagcaaacacacaaaccacaataaacctaattactat |
41024307 |
T |
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