View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14456_low_4 (Length: 486)

Name: NF14456_low_4
Description: NF14456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14456_low_4
NF14456_low_4
[»] scaffold0011 (3 HSPs)
scaffold0011 (152-309)||(135880-136036)
scaffold0011 (360-472)||(135717-135829)
scaffold0011 (16-125)||(136064-136172)
[»] chr2 (3 HSPs)
chr2 (360-472)||(25809053-25809165)
chr2 (152-309)||(25809216-25809370)
chr2 (16-125)||(25809398-25809507)
[»] chr7 (3 HSPs)
chr7 (16-124)||(23067919-23068027)
chr7 (152-309)||(23068039-23068199)
chr7 (360-472)||(23068250-23068362)
[»] chr6 (4 HSPs)
chr6 (152-309)||(26908901-26909050)
chr6 (16-91)||(28705656-28705731)
chr6 (19-83)||(26908835-26908899)
chr6 (360-435)||(26909102-26909178)
[»] chr5 (2 HSPs)
chr5 (360-436)||(20746369-20746446)
chr5 (255-309)||(20746498-20746552)


Alignment Details
Target: scaffold0011 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 152 - 309
Target Start/End: Complemental strand, 136036 - 135880
Alignment:
Q  152 tagtcttttaaataccacattatttatgtctatgaataaacttccatttataattgacattcaagatgtagaacaacacaacaactacnnnnnnnnnntt 251  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  136036 tagtcttttaaataccacattatttatgtgtatgaataaacttccatttataattgacattcaagatgtagaacaacacaacaactac-aaaaaaaaatt 135938  T
Q  252 aactaaatagagaacaaaatagtatcacaagaaattgaaaaacagctcagattttggg 309  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  135937 aactaaatagagaacaaaatagtatcacaaaaaattgaaaaacagctcagattttggg 135880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 360 - 472
Target Start/End: Complemental strand, 135829 - 135717
Alignment:
Q  360 atacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagttcaatgagatgggggtctgggtatgagagagat 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  135829 atacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagtttaattagatgggggtctgggtatgagagagat 135730  T
Q  460 ggggttggaagtg 472  Q
    |||||| ||||||    
T  135729 ggggttagaagtg 135717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 136172 - 136064
Alignment:
Q  16 agataaacatttgttaattctaattcttaatttattgaagaaccttttgatttaattcaaatatcaaacatcattcgatgcttcaacaaaaaccagtttg 115  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  136172 agataaacatttattaattctaattcttaattaattgaagaaccttttgatttaattcaaatatcaaacatcattcaatgcttcaacaaaaa-cagtttg 136074  T
Q  116 cggttcaccc 125  Q
     |||||||||    
T  136073 tggttcaccc 136064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 360 - 472
Target Start/End: Complemental strand, 25809165 - 25809053
Alignment:
Q  360 atacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagttcaatgagatgggggtctgggtatgagagagat 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809165 atacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagttcaatgagatgggggtctgggtatgagagagat 25809066  T
Q  460 ggggttggaagtg 472  Q
    |||||| ||||||    
T  25809065 ggggttagaagtg 25809053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 152 - 309
Target Start/End: Complemental strand, 25809370 - 25809216
Alignment:
Q  152 tagtcttttaaataccacattatttatgtctatgaataaacttccatttataattgacattcaagatgtagaacaacacaacaactacnnnnnnnnnntt 251  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  25809370 tagtcttttaaataccacattatttatgtgtatgaataaatttccatttataattgacattcaagatgtagaacaacacaacaactac---aaaaaaatt 25809274  T
Q  252 aactaaatagagaacaaaatagtatcacaagaaattgaaaaacagctcagattttggg 309  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  25809273 aactaaatagggaacaaaatagtatcacaagaaattgacaaacagctcagattttggg 25809216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 25809507 - 25809398
Alignment:
Q  16 agataaacatttgttaattctaattcttaatttattgaagaaccttttgatttaattcaaatatcaaacatcattcgatgcttcaacaaaaaccagtttg 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  25809507 agataaacatttgttaattctaattcttaattaattgaagaaccttttgatttaatttaaatatcaaacatcattcaatgcttcaacaaaaaccagtttg 25809408  T
Q  116 cggttcaccc 125  Q
    ||||||||||    
T  25809407 cggttcaccc 25809398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 23067919 - 23068027
Alignment:
Q  16 agataaacatttgttaattctaattcttaatttattgaagaaccttttgatttaattcaaatatcaaacatcattcgatgcttcaacaaaaaccagtttg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23067919 agataaacatttgttaattctaattcttaatttattgaagaaccttttgatttaattcaaatatcaaacatcattcaatgcttcaacaaaaaccagtttg 23068018  T
Q  116 cggttcacc 124  Q
    |||||||||    
T  23068019 cggttcacc 23068027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 152 - 309
Target Start/End: Original strand, 23068039 - 23068199
Alignment:
Q  152 tagtcttttaaataccacattatttatgtctatgaataaacttccatttataattgacattcaagatgtagaacaacacaacaactac---nnnnnnnnn 248  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||                
T  23068039 tagtcttttaaataccaaattatttatgtctatgaataaacttccatttataattgacattcaagatgtagaacaacacaataattacaaaaaaaaaaaa 23068138  T
Q  249 nttaactaaatagagaacaaaatagtatcacaagaaattgaaaaacagctcagattttggg 309  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23068139 attaactaaatagagaacaaaatagtatcacaagaaattgaaaaacagctcagattttggg 23068199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 360 - 472
Target Start/End: Original strand, 23068250 - 23068362
Alignment:
Q  360 atacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagttcaatgagatgggggtctgggtatgagagagat 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  23068250 atacctgtgtgggtgcatgcttgtaatgagatgagagatgggttcaatgggttgtgagaagtggagtttaattagatgggggtctgggtatgagagagat 23068349  T
Q  460 ggggttggaagtg 472  Q
    |||||| ||||||    
T  23068350 ggggttagaagtg 23068362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 152 - 309
Target Start/End: Original strand, 26908901 - 26909050
Alignment:
Q  152 tagtcttttaaataccacattatttatgtctatgaataaacttccatttataattgacattcaagatgtagaacaacacaacaactacnnnnnnnnnntt 251  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||              ||    
T  26908901 tagtcttttaaataccacaatatttatgtctatgaataaacttccattgataatttagattcaagatgtagaacaacacaacaa--------aagaaatt 26908992  T
Q  252 aactaaatagagaacaaaatagtatcacaagaaattgaaaaacagctcagattttggg 309  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  26908993 aactaaatggagaacaaaaccgtatcacaagaaattgaaaaacagctcagattttggg 26909050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 28705656 - 28705731
Alignment:
Q  16 agataaacatttgttaattctaattcttaatttattgaagaaccttttgatttaattcaaatatcaaacatcattc 91  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
T  28705656 agataaacatttgttaattctaattcttaatttattgaagaacattttgatttaattcaaaaatcaaacaccattc 28705731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 26908835 - 26908899
Alignment:
Q  19 taaacatttgttaattctaattcttaatttattgaagaaccttttgatttaattcaaatatcaaa 83  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26908835 taaagatttgttaattctaattcttaatttattgaagaaccttttgatttaattcaagtatcaaa 26908899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 26909102 - 26909178
Alignment:
Q  360 atacctgtgtgggtgcatgcttgtaatgagatgagagatggg-ttcaatgggttgtgagaagtggagttcaatgaga 435  Q
    |||||||||||||||||||| ||  || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26909102 atacctgtgtgggtgcatgcgtgggattagatgagagatggggttcaatgggttgtgagaagtggagttcaatgaga 26909178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 360 - 436
Target Start/End: Complemental strand, 20746446 - 20746369
Alignment:
Q  360 atacctgtgtgggtgcatgcttgtaatgagatgagagatggg-ttcaatgggttgtgagaagtggagttcaatgagat 436  Q
    |||||||||||||||||||| ||  || |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20746446 atacctgtgtgggtgcatgcgtgggattagatgagagatggggttcaatgggttgtgagaagtggagttcaatgagat 20746369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 20746552 - 20746498
Alignment:
Q  255 taaatagagaacaaaatagtatcacaagaaattgaaaaacagctcagattttggg 309  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  20746552 taaatagagaacaaaaccgtattacaagaaattgaaaaacagctcagattttggg 20746498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University