View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14456_low_5 (Length: 459)
Name: NF14456_low_5
Description: NF14456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14456_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 7224448 - 7224022
Alignment:
| Q |
17 |
aatgagaagtgattaaagtagtattaattagatttataattggnnnnnnn-taattaatattgtattgaaataactcacttgctat--ggaacggaa--- |
110 |
Q |
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| T |
7224448 |
aatgagaagtgattaaagtagtattaattaaatttataattgaaaaaaaagtaattaatattatattgaaataactcacttgctatatggaacggaagca |
7224349 |
T |
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| Q |
111 |
--aatagataagagc--------------agaaaaattatttcgagaaatgtgaaggttaaggaaatagattcctacatttattaaaaagttaaacaatt |
194 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||| |||||||| | |
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| T |
7224348 |
gtaatagatatgagccaaggagtatttgcagaaaaattatttcgagaaatgtgaaggttaaggaaatagattcccacgtttgttacaaa-ttaaacaact |
7224250 |
T |
|
| Q |
195 |
aactatatagaaactcaaccaaataatttttgagaacatgactattattattacaccaaacacgtttaagaaaaacaagttgagaataagtggccatagt |
294 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7224249 |
aactatatagaaactctaccaaatattttttgagaacatgactattattattacaccaaacacgtttaagaaaaacaagttgagaataagtggccatagt |
7224150 |
T |
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| Q |
295 |
tccaagggggaattatgaaccatatgaaacgaacgcccctagcagctgtaataacctttatcaggtttcatttgattaaaagaatggtctaacatgaatg |
394 |
Q |
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| T |
7224149 |
tccaa-ggggaattatgaaccatatgaaacgaacgcccctagcagctgtaataacctttatcaggtttcatttgattaaaagaatggtctaacatgaat- |
7224052 |
T |
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| Q |
395 |
ggttagttatcttaccaaagttcattagat |
424 |
Q |
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| T |
7224051 |
ggttagttatcttaccaaagttcactagat |
7224022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 29225783 - 29225721
Alignment:
| Q |
24 |
agtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattgaaa |
86 |
Q |
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| T |
29225783 |
agtgatgaaagtagtattaattagagttataattggaaaaaagtaattattattgtattgaaa |
29225721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 4466230 - 4466291
Alignment:
| Q |
22 |
gaagtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattg |
83 |
Q |
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|||||| | |||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
4466230 |
gaagtggtgaaagtagtattaattagagttataattggaaaaaaataattaatattgtattg |
4466291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 72183 - 72245
Alignment:
| Q |
24 |
agtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattgaaa |
86 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
72183 |
agtgatgaaagtagtattaattagatttataattgggaaaaagtaattattattgtattgaaa |
72245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 8149989 - 8149927
Alignment:
| Q |
24 |
agtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattgaaa |
86 |
Q |
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|||||| |||||| ||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
8149989 |
agtgatgaaagtaatattaattagagttataattggaaaaaagtaattaatattgtattgaaa |
8149927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 38319941 - 38319879
Alignment:
| Q |
24 |
agtgattaaagtagtattaattagatttataattggnnnnnnntaattaatattgtattgaaa |
86 |
Q |
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|||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
38319941 |
agtgatgaaagtagtattaattagtgttataattggaaaaaagtaattaatattgtattgaaa |
38319879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 4794604 - 4794568
Alignment:
| Q |
23 |
aagtgattaaagtagtattaattagatttataattgg |
59 |
Q |
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||||||| |||||||||||||||||| |||||||||| |
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| T |
4794604 |
aagtgatgaaagtagtattaattagagttataattgg |
4794568 |
T |
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