View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14456_low_6 (Length: 391)

Name: NF14456_low_6
Description: NF14456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14456_low_6
NF14456_low_6
[»] chr6 (8 HSPs)
chr6 (49-388)||(7682064-7682403)
chr6 (204-366)||(19546826-19546988)
chr6 (204-383)||(8403259-8403438)
chr6 (220-383)||(10906196-10906359)
chr6 (221-314)||(14970565-14970658)
chr6 (204-383)||(9191512-9191685)
chr6 (280-383)||(14988876-14988978)
chr6 (280-383)||(14979763-14979866)
[»] chr5 (5 HSPs)
chr5 (204-388)||(24831484-24831668)
chr5 (205-382)||(13937400-13937578)
chr5 (220-383)||(24759259-24759422)
chr5 (210-383)||(23960376-23960549)
chr5 (220-361)||(17458420-17458561)
[»] chr3 (18 HSPs)
chr3 (204-383)||(14481090-14481269)
chr3 (204-383)||(17791357-17791536)
chr3 (204-383)||(19099797-19099976)
chr3 (204-376)||(19185335-19185507)
chr3 (204-383)||(16359046-16359225)
chr3 (204-383)||(27869980-27870159)
chr3 (210-358)||(22924343-22924491)
chr3 (204-383)||(5943425-5943604)
chr3 (204-383)||(21975674-21975853)
chr3 (204-383)||(21998105-21998284)
chr3 (204-383)||(13928718-13928898)
chr3 (210-383)||(13926320-13926494)
chr3 (280-383)||(14054551-14054654)
chr3 (204-383)||(22160269-22160448)
chr3 (289-383)||(16642818-16642912)
chr3 (207-351)||(19908118-19908262)
chr3 (280-383)||(4712300-4712403)
chr3 (280-383)||(14062280-14062383)
[»] chr4 (9 HSPs)
chr4 (204-383)||(11556400-11556579)
chr4 (204-383)||(11097858-11098038)
chr4 (204-363)||(18220279-18220438)
chr4 (204-366)||(18556402-18556564)
chr4 (206-388)||(30275511-30275693)
chr4 (204-383)||(12229366-12229545)
chr4 (204-383)||(15872315-15872494)
chr4 (204-383)||(15889907-15890086)
chr4 (211-383)||(16284497-16284670)
[»] chr7 (8 HSPs)
chr7 (204-383)||(13477126-13477305)
chr7 (242-383)||(22614569-22614709)
chr7 (204-376)||(20026456-20026628)
chr7 (203-383)||(4531235-4531415)
chr7 (242-383)||(11655623-11655758)
chr7 (204-312)||(37945357-37945465)
chr7 (245-351)||(2889099-2889205)
chr7 (290-383)||(15866777-15866870)
[»] chr2 (6 HSPs)
chr2 (204-383)||(23655922-23656101)
chr2 (204-383)||(24786629-24786808)
chr2 (204-365)||(18986912-18987073)
chr2 (314-383)||(44585972-44586041)
chr2 (204-258)||(44586047-44586101)
chr2 (328-387)||(29637596-29637656)
[»] chr8 (3 HSPs)
chr8 (49-193)||(27148985-27149130)
chr8 (204-377)||(29294336-29294509)
chr8 (280-383)||(23659046-23659149)
[»] scaffold1001 (1 HSPs)
scaffold1001 (241-388)||(1536-1683)
[»] scaffold0737 (1 HSPs)
scaffold0737 (204-360)||(3155-3311)
[»] scaffold0094 (1 HSPs)
scaffold0094 (220-373)||(4181-4334)
[»] scaffold0166 (1 HSPs)
scaffold0166 (220-383)||(1753-1916)
[»] scaffold0385 (1 HSPs)
scaffold0385 (204-359)||(14693-14848)
[»] scaffold0118 (1 HSPs)
scaffold0118 (222-376)||(10586-10740)
[»] scaffold0290 (1 HSPs)
scaffold0290 (282-383)||(13661-13762)
[»] scaffold0048 (2 HSPs)
scaffold0048 (261-378)||(52627-52741)
scaffold0048 (268-320)||(87136-87188)
[»] scaffold0145 (1 HSPs)
scaffold0145 (211-383)||(13047-13220)
[»] scaffold0319 (1 HSPs)
scaffold0319 (280-383)||(13070-13173)
[»] chr1 (4 HSPs)
chr1 (280-383)||(13881757-13881860)
chr1 (280-383)||(51626493-51626596)
chr1 (1-47)||(51856903-51856949)
chr1 (205-255)||(1566682-1566732)
[»] scaffold0091 (1 HSPs)
scaffold0091 (280-375)||(29570-29665)
[»] scaffold0218 (1 HSPs)
scaffold0218 (280-383)||(14889-14992)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 49 - 388
Target Start/End: Complemental strand, 7682403 - 7682064
Alignment:
Q  49 aaaatcacaacaaaagtcaaacgccaacagggagaatacacacacaaagcacagcaacaacagaaccaaacagtatcatagaaccaagttgatgcgtttc 148  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7682403 aaaatcacaacaaaagtcaaacgccaacagggagaatatacacacaaaccacagcaacaacagaaccaaacagtatcatagaaccaagttgatgtgtttc 7682304  T
Q  149 aagaaccaagtatctcacgaaatgcagaagaactacaaatcaaagtatcatagaacctaatcttaactccgttctaatttaaagttactatgtcacctta 248  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7682303 aagaaccaagtatctcacccaatgcagaagaactacaaatcaaagtatcatagaacctaatcttaactccgttctaatttaaagttactatgttacctta 7682204  T
Q  249 tcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcatta 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7682203 tcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcatta 7682104  T
Q  349 taactattacctcttatcctctttcctattcatctcactc 388  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  7682103 taactattacctcttatcctctttcctattcatcttactc 7682064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 204 - 366
Target Start/End: Complemental strand, 19546988 - 19546826
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||| |||  |||||||||||||||||| |||  ||| | ||||||| ||| |||||||  ||||| |||||| |||||| |||||||||||||||    
T  19546988 cctaatctgaacctcgttctaatttaaagttattatcgcacttaatcattactttcgacttcataaacttccctcaccaagacttcattataattcaagg 19546889  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatc 366  Q
    ||| ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  19546888 tttcattctctcgataccagtcattattattatcgtcaaacattataactattacctcttatc 19546826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 8403438 - 8403259
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | |||||||||||||| ||| |||| |||||| || |||||||||||  |||||||||||||||| || ||| ||||||||||     
T  8403438 cctaatcttaacttaatcctaatttaaagttattatctcactttatcagtacttttgacttcagaaactttcctcactaaggcttcatcataattcaaga 8403339  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||||||| |||||  ||  |||| ||||  ||||| |||||||||||||||| ||||||| |||||||| ||||||    
T  8403338 ttttattctcttgataccggttgttatcattattgtcaaacattataactattaccgcttatccgctttcctactcatct 8403259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 383
Target Start/End: Complemental strand, 10906359 - 10906196
Alignment:
Q  220 ttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgata 319  Q
    ||||||||||||||||  || ||||||||||||||   |  || ||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||    
T  10906359 ttctaatttaaagttatcatatcaccttatcattaccctcaacgtcagcaactttactcactaagactccattttaattcaaggttttattctctcgata 10906260  T
Q  320 ctagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||  || ||||||| | |||| | | ||||||||| || |||||||||||||||||||| ||||    
T  10906259 ctgatcgttattatcatcgtctaaccttataactaatatctcttatcctctttcctattaatct 10906196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 314
Target Start/End: Original strand, 14970565 - 14970658
Alignment:
Q  221 tctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctct 314  Q
    ||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||    
T  14970565 tctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctcactacgactccattataattcatggctttattctct 14970658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 9191512 - 9191685
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||||| | |||||||||||| |||  || |||||||||||| |       ||||| ||||||||||||||| |||| | |||||||||||||    
T  9191512 cctaatcttaacttcattctaatttaaaattataatctcaccttatcatcac------cttcagcaactttcctcactacgacttcgttataattcaagg 9191605  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||| ||||||||||||  ||  ||||||| | || | | | ||||||||| || |||||||||||||||||||||||||    
T  9191606 ttttgttctctcgataccggttgttattatcatcgactaaccttataactaatatctcttatcctctttcctattcatct 9191685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 14988978 - 14988876
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||| |||||| ||||||| ||||| |||| |||||||    ||| ||||||| ||||| |||||||||||||||||||||| |    
T  14988978 ctaatacttcattataattcgaggtttcattctcttgataccagtcgttattatatttgtc-atcattacaactactacctcttatcctctttcctatgc 14988880  T
Q  380 atct 383  Q
    ||||    
T  14988879 atct 14988876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 14979866 - 14979763
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||| |||||| |||| || |||||  ||| |||||||   ||||| |||||| ||||| ||||||||||| |||||| ||| |    
T  14979866 ctaatacttcattataattcgaggtttcattcacttgataccggtcgttattatattcgtcactcattacaactactacctcttatcgtctttcatatgc 14979767  T
Q  380 atct 383  Q
    ||||    
T  14979766 atct 14979763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 204 - 388
Target Start/End: Complemental strand, 24831668 - 24831484
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24831668 cctaatcttaactccgttctaatttaaagttactatctcaccttatcattaattttgacttcaacaactttcttcactaagactacattataattcaagg 24831569  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatctcactc 388  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  24831568 ttttattctctcgatactagtcattattattattgtcaaccattataactattacctcttatcctctttcctattcatcttactc 24831484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 205 - 382
Target Start/End: Original strand, 13937400 - 13937578
Alignment:
Q  205 ctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggt 304  Q
    |||||||||||| | |||||||||||||||| ||| |||||||||||||| ||| |||||| | ||||| ||||||||||||| ||||||||||||||||    
T  13937400 ctaatcttaacttcattctaatttaaagttattatctcaccttatcattactttcgacttcgaaaacttccctcactaagacttcattataattcaaggt 13937499  T
Q  305 tttattctctcg-atactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatc 382  Q
    ||||||  |||| |||   ||| ||||||||| | ||||  | |||||||||||||||||| |||||||||||||||||    
T  13937500 tttatttcctcgaatatcggtcgttattattatcatcaaatagtataactattacctcttaccctctttcctattcatc 13937578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 220 - 383
Target Start/End: Original strand, 24759259 - 24759422
Alignment:
Q  220 ttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgata 319  Q
    ||||| |||||||||| ||| ||| |||||| ||| ||| ||||||| |||||||||||| ||||||| |||||||||| ||||  ||||||||||||||    
T  24759259 ttctattttaaagttattatctcatcttatcgttactttcgacttcagcaactttcctcagtaagacttcattataatttaaggagttattctctcgata 24759358  T
Q  320 ctagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |  ||| ||| ||||| ||||||  |||||||||||||||||||||| || |||||||||||||    
T  24759359 caggtcgttaatattatcgtcaaaaattataactattacctcttatcttccttcctattcatct 24759422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 383
Target Start/End: Complemental strand, 23960549 - 23960376
Alignment:
Q  210 cttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttat 309  Q
    ||||||| | |||||||||||||||| ||| |||||||| ||||| ||||||| ||| ||||||||||| | || ||| |||||||| | ||||| ||||    
T  23960549 cttaacttcattctaatttaaagttattatctcaccttaccattacttttgacgtcagcaactttcctcgccaaaactccattataacttaaggtcttat 23960450  T
Q  310 tctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    | |||||||||  ||| |||| |||| | |||| | ||||||||||||||||||||| || ||| |||||||||    
T  23960449 tttctcgataccggtcgttataattatcatcaaactttataactattacctcttatcttccttcttattcatct 23960376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 361
Target Start/End: Original strand, 17458420 - 17458561
Alignment:
Q  220 ttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgata 319  Q
    ||||| |||||||||| ||| ||| |||||  ||| ||| ||||| |||||| ||| ||||||| ||| |||||||||| |||   ||||||||||||||    
T  17458420 ttctattttaaagttattatctcatcttatagttactttcgactttaacaaccttcttcactaaaacttcattataatttaagaagttattctctcgata 17458519  T
Q  320 ctagtcattattattaacgtcaatcattataactattacctc 361  Q
        || |||||||||  |||||  ||||||| |||||||||    
T  17458520 tcgatcgttattattattgtcaaatattataattattacctc 17458561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 14481269 - 14481090
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14481269 cctaatcttaactccgttctaatttaaagttactgtctcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 14481170  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  14481169 ttttattctctcgatactagtcattattattatcgtcaaccattataactattacctcttatcctctttcccattcatct 14481090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 17791357 - 17791536
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||  ||||||||||||||||  ||| |||||||||||||| ||| ||||||| ||||||||||  ||||||||| |||| |||||||||    
T  17791357 cctaatcttaactttgttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcctagctaagactatattacaattcaagg 17791456  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
     || ||||  |||||||||||| ||||||||| |||||||| |||||||||||| |||| ||||||| ||||||||||||    
T  17791457 gttcattccttcgatactagtcgttattattatcgtcaatcgttataactattatctctcatcctctctcctattcatct 17791536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 19099797 - 19099976
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||  ||||||||||||||||  ||| |||||||||||||| ||| ||||||| ||||||||||  ||||||||| |||| |||||||||    
T  19099797 cctaatcttaactttgttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcctagctaagactatattacaattcaagg 19099896  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
     || ||||  |||||||||||| ||||||||| |||||||| |||||||||||| |||| ||||||| ||||||||||||    
T  19099897 gttcattccttcgatactagtcgttattattatcgtcaatcgttataactattatctctcatcctctctcctattcatct 19099976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 19185335 - 19185507
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | ||||||| |||||| ||| |||  |||||| || ||||||||| |  ||||||||||||||||||| ||||| ||||||||     
T  19185335 cctaatcttaacttaatcctaatttgaagttattatctcattttatcagtacttttgactttagaaactttcctcactaagacttcattacaattcaaga 19185434  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttccta 376  Q
    |||||||||||| |||| |||  ||||||||| |||||| |||||||||||||||| ||||||| ||||||||    
T  19185435 ttttattctctcaataccagttgttattattatcgtcaaacattataactattaccgcttatccgctttccta 19185507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 16359225 - 16359046
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | |||||||||||||| ||| |||   ||||| || ||||||| |||  ||||||||||||||||||| ||||||||||||||     
T  16359225 cctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttgacatcagaaactttcctcactaagacttcattataattcaaga 16359126  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||||||||||| |  ||  ||||||||| |||||| | |||||||||||| | ||||||| |||||||| ||||||    
T  16359125 ttttattctctcgatgccggttgttattattatcgtcaaactttataactattatcgcttatccgctttcctactcatct 16359046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 27870159 - 27869980
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||| |||  ||||||||| |||||||| |||  |||||  | |||| |||  ||||||  || || |||||| |||||| |||||||||||||||    
T  27870159 cctaatctaaacctcgttctaatctaaagttattatcgcacctcgtaattactttcaacttcataaatttccctcaccaagacttcattataattcaagg 27870060  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||||||||||||||||  || |||||||||| |||||| |||||| ||||||||||||||||   ||||||||||||||    
T  27870059 ttttattctctcgataccggttattattattatcgtcaaacattatcactattacctcttatctggtttcctattcatct 27869980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 358
Target Start/End: Original strand, 22924343 - 22924491
Alignment:
Q  210 cttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttat 309  Q
    ||||||| | ||||| |||||||||| ||| ||| |||||  ||| ||| ||||||||||||||||||||||||||||  ||||||||| ||||  ||||    
T  22924343 cttaacttcattctattttaaagttattatctcatcttatagttactttcgacttcaacaactttcctcactaagactttattataatttaaggagttat 22924442  T
Q  310 tctctcgatactagtcattattattaacgtcaatcattataactattac 358  Q
    ||||||||||   ||| ||||||||| |||||| |||||||||||||||    
T  22924443 tctctcgatatcggtctttattattatcgtcaaacattataactattac 22924491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 5943604 - 5943425
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||| |  |||||||||| || ||| |||  |||||||||||||  ||  ||||||| ||||||| |||||| |||| |||||||||||||||    
T  5943604 cctaatcttaattttgttctaatttgaaattattatcacaccttatcattaccttcaacttcaataactttcgtcactacgacttcattataattcaagg 5943505  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||||||||||||| |||  ||||||| |  ||| | | ||||| ||| || ||| ||||||||||||||| |||||    
T  5943504 ttttattctctcgataccagttgttattatcatagtctaaccttatagctaatatctcatatcctctttcctatccatct 5943425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 21975674 - 21975853
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | |||||||||| ||| ||| |||| |||||| || | |||||||||  |||||||||||||||| ||   ||||||||||||     
T  21975674 cctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgacttcagaaactttcctcactaaggcttatttataattcaaga 21975773  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||||||||||||||||  ||  ||||||||| | |||| |||||||  ||||||| ||||||| |||||||| ||||||    
T  21975774 ttttattctctcgataccggttgttattattatcatcaaacattatatttattaccgcttatccgctttcctactcatct 21975853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 21998105 - 21998284
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | |||||||||| ||| ||| |||| |||||| || | |||||||||  |||||||||||||||| ||   ||||||||||||     
T  21998105 cctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgacttcagaaactttcctcactaaggcttatttataattcaaga 21998204  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||||||||||||||||  ||  ||||||||| | |||| |||||||  ||||||| ||||||| |||||||| ||||||    
T  21998205 ttttattctctcgataccggttgttattattatcatcaaacattatatttattaccgcttatccgctttcctactcatct 21998284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 13928898 - 13928718
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattc-aag 302  Q
    ||||| ||||||| | ||||| |||||||||| ||   || |||||| ||| ||| ||||||| ||||||||||| | |||||| ||||||||||  |||    
T  13928898 cctaaccttaacttcattctattttaaagttattaccccatcttatctttactttcgacttcagcaactttcctcgccaagacttcattataattttaag 13928799  T
Q  303 gttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |  |||||||||||||||  ||| ||||  ||| ||||||  |||||||||||||||||||||| || |||||||||||||    
T  13928798 gagttattctctcgataccggtcgttatatttatcgtcaaatattataactattacctcttatcttccttcctattcatct 13928718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 383
Target Start/End: Complemental strand, 13926494 - 13926320
Alignment:
Q  210 cttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataa-ttcaaggtttta 308  Q
    ||||||| | ||||| |||||||||| ||   || |||||| ||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||  |||    
T  13926494 cttaacttcattctattttaaagttattaccccatcttatcgttacttttgacttcagcaactttcctcgctaagacttcattataattttaaggagtta 13926395  T
Q  309 ttctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||| |||||   ||| ||||  ||| ||||||  |||||||||||||||||||||| |  |||||||| ||||    
T  13926394 ttctcacgatatcggtcgttatatttatcgtcaaatattataactattacctcttatcttacttcctatttatct 13926320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 14054654 - 14054551
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||| |||||| ||||||| |||||  |||||||||||   ||||| |||||| ||||| ||||| |||||||||||||||| |    
T  14054654 ctaatacttcattataattcgaggtttcattctcttgataccggtcattattatattcgtcactcattacaactactacctattatcctctttcctatgc 14054555  T
Q  380 atct 383  Q
    ||||    
T  14054554 atct 14054551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 22160269 - 22160448
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | |||||||||| ||| ||| |||| |||||| || | |||||||||  |||||| ||||||||| ||   ||||||||| ||     
T  22160269 cctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgacttcagaaacttttctcactaaggcttatttataattctaga 22160368  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||||||||||||||||  ||  ||||||||| |||||| |||||||  ||||  | ||||||| | |||||| ||||||    
T  22160369 ttttattctctcgataccggttgttattattatcgtcaaacattatatttattttcgcttatccgccttcctactcatct 22160448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 383
Target Start/End: Original strand, 16642818 - 16642912
Alignment:
Q  289 cattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||||||| |||||| ||||||| |||||  ||| |||||||   ||||| |||||| ||||| |||||||||||||||||||||| |||||    
T  16642818 cattataattcgaggtttcattctcttgataccggtcgttattatattcgtcactcattacaactactacctcttatcctctttcctatgcatct 16642912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 351
Target Start/End: Complemental strand, 19908262 - 19908118
Alignment:
Q  207 aatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttt 306  Q
    ||||||||||   |||||||||||||||| ||| |||||||||| ||| ||| ||  ||| ||||||||| || ||| ||| ||||| | || | ||||     
T  19908262 aatcttaacttatttctaatttaaagttattatctcaccttatcgttactttcgatgtcagcaactttccccaataaaacttcattacattttagggttc 19908163  T
Q  307 tattctctcgatactagtcattattattaacgtcaatcattataa 351  Q
    || ||||||  ||| | |||||||| ||| | |||||||||||||    
T  19908162 taatctctcattaccattcattattgttatcatcaatcattataa 19908118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 4712403 - 4712300
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||| |||||| |||| || |||||  ||| |||||||   ||||| |||||| ||||| ||||||||||| |||||| ||| |    
T  4712403 ctaatacttcattataattcgaggtttcattcacttgataccggtcgttattatattcgtcactcattacaactactacctcttatcgtctttcatatgc 4712304  T
Q  380 atct 383  Q
    ||||    
T  4712303 atct 4712300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 14062383 - 14062280
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| |||||| |||| |||||| ||| ||| |||||  ||| |||||||   ||||| |||||| ||||| ||||||||||||| |||||||| |    
T  14062383 ctaatacttcattatcattcgaggtttcattatcttgataccggtcgttattatattcgtcactcattacaactactacctcttatcctatttcctatgc 14062284  T
Q  380 atct 383  Q
    ||||    
T  14062283 atct 14062280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 11556400 - 11556579
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||||| | |||||||||||||||| ||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  11556400 cctaatcttaacttcattctaatttaaagttattatctcaccatatcattaatttcgacttcagcaactttcctcactaagactacattataattcaagg 11556499  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||| |||||||| ||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  11556500 tttcattctctcaatactagtcgttattattatcgtcaaccattataattattacctcttatcctctttcctattcatct 11556579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 11098038 - 11097858
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactac-attataattcaag 302  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||||| | |||||||||||    
T  11098038 cctaatcttaacttcgttctaatttaaagttattatctcaccttatcattaattttgacttcagaaactttcctcactaagactacaaatataattcaag 11097939  T
Q  303 gttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||| |||||||||||||||||| ||||| ||| ||| || |||||||| |||||||||||||||||||||||||||||||    
T  11097938 gtttcattctctcgatactagtcgttattgttatcgtaaaccattataattattacctcttatcctctttcctattcatct 11097858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 204 - 363
Target Start/End: Complemental strand, 18220438 - 18220279
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||||| | ||||||| |||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  18220438 cctaatcttaacttcattctaatataaagttattatctcaccttatcattaatttcgacttcaacaacttttctcactaagactacattataattcaagg 18220339  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctctt 363  Q
    ||| |||||||||||||||||| |||||||||  | ||| ||||||||||||||||||||    
T  18220338 tttcattctctcgatactagtcgttattattattgacaaccattataactattacctctt 18220279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 204 - 366
Target Start/End: Complemental strand, 18556564 - 18556402
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||| |||  |||||||||||||||||| |||  ||| ||||||||| ||| |||||||  ||||| |||||| |||||| |||||||||||||||    
T  18556564 cctaatctgaacctcgttctaatttaaagttattatcgcactttatcattactttcgacttcataaacttccctcaccaagacttcattataattcaagg 18556465  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatc 366  Q
    ||| ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  18556464 tttcattctctcgataccagtcattattattatcgtcaaacattataactattacctcttatc 18556402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 206 - 388
Target Start/End: Complemental strand, 30275693 - 30275511
Alignment:
Q  206 taatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggtt 305  Q
    ||||||||||| | |||||||||||||||| ||| |||||||||||||| ||| ||| ||| ||||||||| |||||| ||| ||||||| || | ||||    
T  30275693 taatcttaacttcattctaatttaaagttattatttcaccttatcattactttcgacgtcatcaactttcc-cactaaaacttcattatattttagggtt 30275595  T
Q  306 ttattctctcgatactagtcattattattaacgtcaatcattata-actattacctcttatcctctttcctattcatctcactc 388  Q
    ||| | ||||| ||| |||| ||||||||| |||||| ||||||| ||||||| |||||||| |||||  ||||||||| ||||    
T  30275594 ttaatatctcgttaccagtcgttattattatcgtcaaacattatatactattatctcttatcttcttttttattcatcttactc 30275511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 12229366 - 12229545
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | ||||||| |||||| ||| |||| |||||| || ||| | |||||  ||||||| ||||||||||| || |||||||||||     
T  12229366 cctaatcttaacttaatcctaatttgaagttattatctcactttatcagtactttcggcttcagaaactttcttcactaagacttcagtataattcaaga 12229465  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||| | || ||||  ||  ||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||    
T  12229466 ttttattttttcaataccggttgttattattatcgtcaaacattataactattaccgcttatcctctttcctactcatct 12229545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 15872494 - 15872315
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | |||||||||||||| ||| |||   ||||| || ||||||  |||  |||||||||||||||| || ||||||||||||||     
T  15872494 cctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttgatatcagaaactttcctcactaaggcttcattataattcaaga 15872395  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||||||||||| |  ||  ||||||||| |||||| |||||||||||||| | ||||||  |||||||| ||||||    
T  15872394 ttttattctctcgatgccggttgttattattatcgtcaaacattataactattatcgcttatctgctttcctactcatct 15872315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 15890086 - 15889907
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | |||||||||||||| ||| |||   ||||| || ||||||| |||  |||||||||||||||| || ||||||||||||||     
T  15890086 cctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttgacatcagaaactttcctcactaaggcttcattataattcaaga 15889987  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||||||||||| |  ||  ||||||||| | |||| |||||||||||||| | |||||||  ||||||| ||||||    
T  15889986 ttttattctctcgatgccggttgttattattatcatcaaacattataactattatcgcttatccggtttcctactcatct 15889907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 211 - 383
Target Start/End: Complemental strand, 16284670 - 16284497
Alignment:
Q  211 ttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataa-ttcaaggttttat 309  Q
    |||||| | ||||| |||||||||| ||| ||| |||||| ||| |||  ||||||||||||||||||||||| ||| |||||||| || ||||  ||||    
T  16284670 ttaacttcattctattttaaagttattatctcatcttatcgttactttcaacttcaacaactttcctcactaaaacttcattataattttaaggagttat 16284571  T
Q  310 tctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||||||  |||| ||||  ||| |  ||| |||||||| | |||| ||||||| | |||||||| |||||    
T  16284570 tctctcgatatcagtcgttatatttatcaacaaacattataaattttacgtcttatcttatttcctatacatct 16284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 13477305 - 13477126
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||||| |||||||| ||||| ||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  13477305 cctaatcttaacttcgttctaaattaaacttattatctcaccttatcattaatttggacttcagcaactttcctcactaagactacattataatttaagg 13477206  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||| ||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||| |||||||||||||||||||    
T  13477205 tttcattctctcgatactagtcattattattattgtcaaccattataactattatctcttgtcctctttcctattcatct 13477126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 242 - 383
Target Start/End: Complemental strand, 22614709 - 22614569
Alignment:
Q  242 caccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtca 341  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |    
T  22614709 caccttatcattaattt-gactttagcaactttcctcactaagactacattataattcaaggtttcattctctcgatactagtctttattattatcgtta 22614611  T
Q  342 atcattataactattacctcttatcctctttcctattcatct 383  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  22614610 accattataactattacctcttatcctctttcctattcatct 22614569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 20026456 - 20026628
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||||| | |||||||||| ||||| ||| ||||| |||||||||||| ||||||||||||||||||||||| |||| |||| ||||| ||||    
T  20026456 cctaatcttaacttcattctaatttagagttattatctcaccctatcattaatttcgacttcaacaactttcctcactacgactccattctaattaaagg 20026555  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttccta 376  Q
    |||||||||||||||||| ||||||||||| | |||| | | ||||||||| ||  ||||||| |||||||||    
T  20026556 ttttattctctcgatactggtcattattatcatcgtctaaccttataactaatatttcttatcttctttccta 20026628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 203 - 383
Target Start/End: Complemental strand, 4531415 - 4531235
Alignment:
Q  203 acctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaag 302  Q
    |||||||||||||| |||||||||||||||||| ||| ||||||||||||| | || |||||||||| |||||| || | ||||| || |||||||| ||    
T  4531415 acctaatcttaacttcgttctaatttaaagttattatctcaccttatcattgaattcgacttcaacagctttccccaatgagacttcactataattcgag 4531316  T
Q  303 gttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||  |||||||||||||  || ||||||||| |||||| ||| ||||||||||||| ||||||| |||||||| |||||    
T  4531315 gtttccttctctcgatactgatcgttattattatcgtcaaccatcataactattaccttttatcctatttcctatgcatct 4531235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 242 - 383
Target Start/End: Original strand, 11655623 - 11655758
Alignment:
Q  242 caccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtca 341  Q
    ||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||      
T  11655623 caccttatcattaatttcgactttagcaactttcctcactaatactacattataattcaaggtttcattctgtcgatactagtctttattattattgt-- 11655720  T
Q  342 atcattataactattacctcttatcctctttcctattcatct 383  Q
         |||||||||||||||||||||||||||||||||||||    
T  11655721 ----atataactattacctcttatcctctttcctattcatct 11655758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 312
Target Start/End: Complemental strand, 37945465 - 37945357
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   |||||| ||||||||| ||| ||||||| |||||| |||  |||||| |||||||||||||||||||| ||||||||||||||     
T  37945465 cctaatcttaacttgattctaaattaaagttattatctcaccttttcattactttcaacttcagcaactttcctcactaagacttcattataattcaaga 37945366  T
Q  304 ttttattct 312  Q
    |||||||||    
T  37945365 ttttattct 37945357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 351
Target Start/End: Complemental strand, 2889205 - 2889099
Alignment:
Q  245 cttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatc 344  Q
    |||||||||| ||||||| ||||||||||| |||||||| ||| ||||  | || | ||||||||||||||| ||    | ||||||||||  |||||||    
T  2889205 cttatcattatttttgacatcaacaacttttctcactaaaacttcatttcattttagggttttattctctcgttatcgattattattattattgtcaatc 2889106  T
Q  345 attataa 351  Q
    |||||||    
T  2889105 attataa 2889099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 383
Target Start/End: Complemental strand, 15866870 - 15866777
Alignment:
Q  290 attataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||||||||  |||||| ||||||| |||||  ||| |||||||   ||||| |||||| ||||| ||||||||||| |||||||||| |||||    
T  15866870 attataatttgaggtttcattctcttgataccggtcgttattatattcgtcactcattacaactactacctcttatcgtctttcctatgcatct 15866777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 204 - 383
Target Start/End: Complemental strand, 23656101 - 23655922
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||||| | |||||||||||||| | ||| ||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||||||| |    
T  23656101 cctaatcttaacttcattctaatttaaagtaattatctcaccttattattaatctcgacttcaacaactttcttcactaagactacattataattcaatg 23656002  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||| |||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||||| ||||||||||||||    
T  23656001 tttcattctctcgatactagtcattattattatcgtcaaccattataactgttaccacttatcctttttcctattcatct 23655922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 204 - 383
Target Start/End: Original strand, 24786629 - 24786808
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||    
T  24786629 cctaatcttaacttcgttctaatttatagttattatctcaccttatcattaatttcgacttcaacaagtttcctcactaagactatattataatccaagg 24786728  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||| ||||||||||| ||||| |||||||||| |||||| |||||||||||||| |||||||||| |||| |||||||||    
T  24786729 tttcattctctcgattctagttattattattatcgtcaaccattataactattaactcttatcctttttcatattcatct 24786808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 365
Target Start/End: Complemental strand, 18987073 - 18986912
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||| |||  ||||||||| |||||||| |||  |||||  |||||| ||| ||||||   ||||| |||||| |||||| |||||| ||||||||    
T  18987073 cctaatctgaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattattattcaagg 18986974  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttat 365  Q
    |||||||||||||||||  ||||||||||||| ||||||  |||||||||||||||||||||    
T  18986973 ttttattctctcgataccggtcattattattatcgtcaaagattataactattacctcttat 18986912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 44586041 - 44585972
Alignment:
Q  314 tcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  44586041 tcgatactagtcgttattattatcgtcaaccattataactattacctcttatcctatttcctattcatct 44585972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 44586101 - 44586047
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattt 258  Q
    ||||||||||||| | |||||||||||||||| ||| |||||| |||||||||||    
T  44586101 cctaatcttaacttcattctaatttaaagttattatctcacctcatcattaattt 44586047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 29637596 - 29637656
Alignment:
Q  328 tattattaacgtcaatcattat-aactattacctcttatcctctttcctattcatctcact 387  Q
    |||||||| ||||||||||||| |||||||| ||||||||  |||||  ||||||||||||    
T  29637596 tattattatcgtcaatcattataaactattatctcttatctactttctcattcatctcact 29637656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 27148985 - 27149130
Alignment:
Q  49 aaaatcacaacaaaagtcaaacgccaacagggagaatacacacacaaagcacagcaacaacagaaccaaacagtatcatagaaccaagttgatgcg-ttt 147  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27148985 aaaatcacaacaaaagccaaacggcaacagggagaatatacacacaaagcacagcaacaacagaaccaaacagtatcatagaaccaagttgatgcgtttt 27149084  T
Q  148 caagaaccaagtatctcacgaaatgcagaagaactacaaatcaaag 193  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||    
T  27149085 caagaaccaaatatctcacgcaatgcagaagaactacatatcaaag 27149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 204 - 377
Target Start/End: Original strand, 29294336 - 29294509
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||| |||||||| ||| |||||||||||||| ||| ||||||||| ||||| |||||||||| |||||||||||||| ||||| || |||||||  |||    
T  29294336 cctactcttaacttcgtcctaatttaaagttattatctcaccttataattaaatttgacttcagcaactttcctcactgagacttcactataatttgagg 29294435  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctat 377  Q
    ||| |||||||||||||  ||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||    
T  29294436 tttcattctctcgataccggtcgttattattatcgtcaatcattataactattacctcttatactatttcctat 29294509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 383
Target Start/End: Original strand, 23659046 - 23659149
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||| |||||| ||||||| ||||   ||| ||||||||  ||||| |||||  | ||| ||| |||||||||||||||||| |    
T  23659046 ctaatacttcattataattcgaggtttcattctcttgatatcggtcgttattattttcgtcactcattgaatctactacatcttatcctctttcctatgc 23659145  T
Q  380 atct 383  Q
    ||||    
T  23659146 atct 23659149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 241 - 388
Target Start/End: Original strand, 1536 - 1683
Alignment:
Q  241 tcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtc 340  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  1536 tcacattatcattaatttcgacttcaacaactttcctcaccaagactacattataattcaaggtttcaatctctcgatactagtcgttattattatcgtc 1635  T
Q  341 aatcattataactattacctcttatcctctttcctattcatctcactc 388  Q
    || |||||||||||||||||||||| ||||||||||||||||| ||||    
T  1636 aaccattataactattacctcttattctctttcctattcatcttactc 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 204 - 360
Target Start/End: Complemental strand, 3311 - 3155
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||||||||||| || |||||||||||||||||||| | ||||| || ||||||||||||    
T  3311 cctaatcttaacttcgttctaatttaaagttattatctcaccttatcattaaattagacttcaacaactttcctcattgagacttcactataattcaagg 3212  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacct 360  Q
    ||| ||||||| ||||| |||||||||||||| |||||| |||||||||||||||||    
T  3211 tttcattctcttgataccagtcattattattatcgtcaaccattataactattacct 3155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 220 - 373
Target Start/End: Complemental strand, 4334 - 4181
Alignment:
Q  220 ttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgata 319  Q
    |||||||||||||||| |||  ||| | ||||||| ||| |||||||  ||||| |||||| |||||| |||||||||||||||||| ||||||||||||    
T  4334 ttctaatttaaagttattatcgcacttgatcattactttcgacttcataaacttccctcaccaagacttcattataattcaaggtttcattctctcgata 4235  T
Q  320 ctagtcattattattaacgtcaatcattataactattacctcttatcctctttc 373  Q
    |||||||||||||||| |||||| ||||||||||| |||||||| || ||||||    
T  4234 ctagtcattattattatcgtcaaacattataactactacctcttctcttctttc 4181  T

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Target: scaffold0166 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 220 - 383
Target Start/End: Original strand, 1753 - 1916
Alignment:
Q  220 ttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgata 319  Q
    ||||| |||||||||| ||| ||| |||||| ||| ||| ||||||| |||||||||||| ||||||| |||||||||| ||||  ||||||||||||||    
T  1753 ttctattttaaagttattatctcatcttatcgttactttcgacttcagcaactttcctcagtaagacttcattataatttaaggagttattctctcgata 1852  T
Q  320 ctagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    |  ||| ||| ||||| ||||||  |||||||||||||||||||||| || |||||||||||||    
T  1853 caggtcgttaatattatcgtcaaaaattataactattacctcttatcttccttcctattcatct 1916  T

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Target: scaffold0385 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 204 - 359
Target Start/End: Original strand, 14693 - 14848
Alignment:
Q  204 cctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 303  Q
    |||||||||||||   | |||||||||| ||| ||| |||| |||||| || |||||||||||  || ||||||||||||| || | ||||||||||||     
T  14693 cctaatcttaacttaatcctaatttaaatttattatctcactttatcaatacttttgacttcagaaaatttcctcactaaggcttctttataattcaaga 14792  T
Q  304 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacc 359  Q
    ||||||||||||| ||| |||  ||||||||| |||||| ||||||||||||||||    
T  14793 ttttattctctcgttaccagttgttattattatcgtcaaacattataactattacc 14848  T

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Target: scaffold0118 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 376
Target Start/End: Original strand, 10586 - 10740
Alignment:
Q  222 ctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaaggttttattctctcgatact 321  Q
    ||||||||||| || ||| |||| ||| ||||| |||| ||||||  |||||||||||||||  || |||||||||||||| |||||||||||| |||      
T  10586 ctaatttaaagctattatctcactttaccattacttttaacttcagaaactttcctcactaatgcttcattataattcaagattttattctctcaatatc 10685  T
Q  322 agtcattattattaacgtcaatcattataactattacctcttatcctctttccta 376  Q
     ||  ||||||||| |||||| |||||||||||||||| ||||||| ||||||||    
T  10686 tgttgttattattatcgtcaaacattataactattaccgcttatccgctttccta 10740  T

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Target: scaffold0290 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 13762 - 13661
Alignment:
Q  282 aagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcat 381  Q
    |||||| ||||||||||||||||||||||||||||||||  ||||||||||||| || |||  |||||||||||||||||||||   |||| ||||||||    
T  13762 aagacttcattataattcaaggttttattctctcgataccggtcattattattatcgccaaagattataactattacctcttatttgcttttctattcat 13663  T
Q  382 ct 383  Q
    ||    
T  13662 ct 13661  T

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Target: scaffold0048 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 378
Target Start/End: Original strand, 52627 - 52741
Alignment:
Q  261 acttcaacaactttcctcactaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacct 360  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||  |   || |||||| |||| | | ||||||||| ||  |    
T  52627 acttcagcaactttcctcactaagactccattataatttaaggttttattctctcgataccgg---ttgttattatcgtctaaccttataactaatatat 52723  T
Q  361 cttatcctctttcctatt 378  Q
    ||||||||||||||||||    
T  52724 cttatcctctttcctatt 52741  T

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Target: scaffold0048; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 87188 - 87136
Alignment:
Q  268 caactttcctcactaagactacattataattcaaggttttattctctcgatac 320  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||    
T  87188 caactttcctctctaagactccattataatttaaggttttattctctcgatac 87136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 211 - 383
Target Start/End: Original strand, 13047 - 13220
Alignment:
Q  211 ttaactccgttctaatttaaagttactatgtcaccttatcattaattttgacttcaacaactttcctcactaagactacattataa-ttcaaggttttat 309  Q
    |||||| | ||||| |||||||||| ||| ||| |||||| ||| |||  ||||||||||||||||||||||| ||| |||||||| || ||||  ||||    
T  13047 ttaacttcattctattttaaagttattatctcatcttatcgttactttcaacttcaacaactttcctcactaaaacttcattataattttaaggagttat 13146  T
Q  310 tctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatct 383  Q
    ||||||||||  |||| ||||  ||| | |||| |||||||| | |||| ||||||| | |||||||| |||||    
T  13147 tctctcgatatcagtcgttatatttatcatcaaacattataaatgttacgtcttatcttatttcctatacatct 13220  T

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Target: scaffold0319 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 13173 - 13070
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||| ||||||| |||||| |||||| ||| |||||||   ||||| |||||| ||||  |||||||||||||||||||||| |    
T  13173 ctaatacttcattataattcgaggtttttttctcttgatactggtcgttattatattcgtcactcattacaacttctacctcttatcctctttcctatgc 13074  T
Q  380 atct 383  Q
    ||||    
T  13073 atct 13070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 13881860 - 13881757
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||| |||||| ||||||| |||||  ||| |||||||   ||||| |||||| ||||| |||||||||||||||||||||| |    
T  13881860 ctaatacttcattataattcgaggtttcattctcttgataccggtcgttattatattcgtcactcattacaactactacctcttatcctctttcctatgc 13881761  T
Q  380 atct 383  Q
    ||||    
T  13881760 atct 13881757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 383
Target Start/End: Complemental strand, 51626596 - 51626493
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||| |||||| ||||| | |||||   || |||||||   ||||| |||||| |||||||||||||||||||||||||||| |    
T  51626596 ctaatacttcattataattcgaggtttcattcttttgataccgttcgttattatattcgtcactcattacaactattacctcttatcctctttcctatgc 51626497  T
Q  380 atct 383  Q
    ||||    
T  51626496 atct 51626493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 51856903 - 51856949
Alignment:
Q  1 gacacttattaccttcgtgagttgcacacacatctagaaataagcac 47  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  51856903 gacacttattacctttgtgagttgtacacacacctagaaataagcac 51856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 1566732 - 1566682
Alignment:
Q  205 ctaatcttaactccgttctaatttaaagttactatgtcaccttatcattaa 255  Q
    |||||||||||| |||||||||||||||||| |||  ||||||| ||||||    
T  1566732 ctaatcttaacttcgttctaatttaaagttattatcccaccttaccattaa 1566682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 29570 - 29665
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcct 375  Q
    |||| ||| ||||||||||| |||||| ||||||| |||||  ||| |||||||   ||||| |||||| ||||| ||||||||||||||||||||    
T  29570 ctaatacttcattataattcgaggtttcattctcttgataccggtcgttattatattcgtcactcattacaactactacctcttatcctctttcct 29665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 383
Target Start/End: Original strand, 14889 - 14992
Alignment:
Q  280 ctaagactacattataattcaaggttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattc 379  Q
    |||| ||| ||||||||||  |||||| |||||||  ||||  ||| |||||||   ||||| |||||| ||||| |||||||||||||||||||||| |    
T  14889 ctaatacttcattataatttgaggtttcattctcttaataccggtcgttattatattcgtcactcattacaactactacctcttatcctctttcctatgc 14988  T
Q  380 atct 383  Q
    ||||    
T  14989 atct 14992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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