View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14457_low_4 (Length: 207)

Name: NF14457_low_4
Description: NF14457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14457_low_4
NF14457_low_4
[»] chr5 (5 HSPs)
chr5 (1-198)||(35106573-35106770)
chr5 (1-180)||(7155108-7155288)
chr5 (1-117)||(4261305-4261420)
chr5 (48-117)||(11695107-11695176)
chr5 (45-93)||(8787653-8787700)
[»] chr7 (5 HSPs)
chr7 (1-180)||(28574432-28574612)
chr7 (1-97)||(45669882-45669979)
chr7 (43-118)||(39023507-39023582)
chr7 (28-98)||(46574899-46574971)
chr7 (53-97)||(23709398-23709442)
[»] chr8 (4 HSPs)
chr8 (1-180)||(16611037-16611211)
chr8 (1-180)||(8164421-8164601)
chr8 (61-97)||(13520482-13520518)
chr8 (61-97)||(13610017-13610053)
[»] chr1 (6 HSPs)
chr1 (1-180)||(29827660-29827840)
chr1 (5-184)||(25175313-25175488)
chr1 (28-97)||(31017168-31017236)
chr1 (15-127)||(37493189-37493302)
chr1 (31-117)||(43449521-43449606)
chr1 (12-71)||(15965216-15965275)
[»] chr4 (4 HSPs)
chr4 (1-117)||(43793160-43793277)
chr4 (43-177)||(42507189-42507322)
chr4 (60-97)||(20680105-20680142)
chr4 (150-182)||(43793998-43794030)
[»] chr6 (1 HSPs)
chr6 (41-95)||(12748395-12748449)
[»] chr2 (2 HSPs)
chr2 (12-97)||(3272467-3272553)
chr2 (53-96)||(3272535-3272578)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35106573 - 35106770
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaattatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatttac 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35106573 atacttgtatggacacaacaccaaatcaaattatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatttac 35106672  T
Q  101 ttatctttcatacttttcacttgtatgcgtacgcgcctaaatgagttatatttatgcttgtgaccaagcaagtgtttctcttgccgttcatatcactc 198  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  35106673 ttctctttcatacttttcacttgtatgtgtacgcgcctaaatgagttatatttatgtttgtgaccaagcaagtgtttctcttgccgtttatgtcactc 35106770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 7155288 - 7155108
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaatt-atttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaattta 99  Q
    |||||| ||| ||||||| || |||||||| | ||||||  | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||      
T  7155288 atacttatatagacacaatactaaatcaaaatcatttagatatacactcattaaaatatctatcatttaattatttcaaaaatatatattatttaattct 7155189  T
Q  100 cttatctttcatacttttcacttgtatgcgtacgcgcctaaatgagttatatttatgcttgtgaccaagcaagtgtttctc 180  Q
     || |||||||||||||| |    |||| ||  | | |||||||| |  | ||||||||||||||||||||||||| ||||    
T  7155188 tttctctttcatactttttatcattatgtgtgtgtgtctaaatgactcgtttttatgcttgtgaccaagcaagtgtatctc 7155108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 4261305 - 4261420
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaatt-atttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaattta 99  Q
    |||||| ||| | |||||||| |||||||| | ||||||  ||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||     
T  4261305 atacttatatagccacaacaccaaatcaaaatcatttagacacacactaattaaaatatctattatttaattatttcaaaaatatatattatttaattt- 4261403  T
Q  100 cttatctttcatactttt 117  Q
     || ||||||||||||||    
T  4261404 -ttctctttcatactttt 4261420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 11695176 - 11695107
Alignment:
Q  48 cattcaaatatctatcatttaattatttcaaaaagatatattatttaatttacttatctttcatactttt 117  Q
    |||| ||||||| |||||||||||| ||  |||| |||||||||||||||   |||||||||||| ||||    
T  11695176 cattaaaatatcgatcatttaattaattttaaaatatatattatttaattcttttatctttcatattttt 11695107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 8787700 - 8787653
Alignment:
Q  45 actcattcaaatatctatcatttaattatttcaaaaagatatattattt 93  Q
    ||||||| | |||||||||||||| |||||| |||||||||||||||||    
T  8787700 actcattaatatatctatcattta-ttattttaaaaagatatattattt 8787653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 28574612 - 28574432
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaattattt-agggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaattta 99  Q
    |||||| |||||||||||||| |||||||| | ||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||      
T  28574612 atacttatatggacacaacaccaaatcaaaatcttttaggcacacactcattaaaatatctatcatttagttatttcaaaaagatatatt-ttaaattct 28574514  T
Q  100 cttatctttcatacttttcacttgtatgcgtacgcgcctaaatgagttatatttatgcttgtgaccaagc-aagtgtttctc 180  Q
     || |||||||||||||||  || |||| ||| ||||||||||||   |||||||||||||| ||||||| |||||||||||    
T  28574513 tttctctttcatacttttcttttttatgtgtatgcgcctaaatgacacatatttatgcttgtcaccaagcaaagtgtttctc 28574432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 45669882 - 45669979
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaa-ttatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatt 97  Q
    |||||| ||| || ||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||    
T  45669882 atacttatatagagacaacaccaaatcaaaattatttaggcacacactcattaaaatatctatcatttaattatttaaaaaaaaaatattatttaatt 45669979  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 39023507 - 39023582
Alignment:
Q  43 acactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatttacttatctttcatacttttc 118  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||   || |||||||||||||||    
T  39023507 acactcattaaaatatttatcatttaattatttcaaaaagatatattttttaattcttttctctttcatacttttc 39023582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 46574899 - 46574971
Alignment:
Q  28 aaattatttagggacacactcattcaaatatctatcatttaattatttcaaaa--agatatattatttaattt 98  Q
    |||||||||||  | ||||||||| |||||||||||| ||||||| || ||||  | ||||||||||||||||    
T  46574899 aaattatttagatatacactcattaaaatatctatcaattaattactttaaaaataaatatattatttaattt 46574971  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 23709442 - 23709398
Alignment:
Q  53 aaatatctatcatttaattatttcaaaaagatatattatttaatt 97  Q
    |||||| | |||||||||||||| ||||||| |||||||||||||    
T  23709442 aaatatatttcatttaattatttaaaaaagaaatattatttaatt 23709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 16611211 - 16611037
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaatt-atttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaattta 99  Q
    ||||||||||| |||||| || |||| ||| | ||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||  |||||||     
T  16611211 atacttgtatgaacacaaaaccaaattaaaatcatttaggcacatattcattaaaatatctatcatttaattatttcaaaaagatatatttattaatttc 16611112  T
Q  100 cttatctttcatacttttcacttgtatgcgtacgcgcctaaatgagttatatttatgcttgtgaccaagcaagtgtttctc 180  Q
     || ||||||| ||||||| ||  |||| ||    ||||||||||   |||||||||||||||||||||||||||||||||    
T  16611111 tttctctttcacacttttccct--tatgtgt----gcctaaatgatacatatttatgcttgtgaccaagcaagtgtttctc 16611037  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 8164601 - 8164421
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaa-ttatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaattta 99  Q
    |||||| |||||||||||||| |||||||| || |||||| ||||| | ||| ||||||||||| |||||||||||||||||| |||||| || ||||      
T  8164601 atacttatatggacacaacaccaaatcaaaattttttaggcacacatttattaaaatatctatcctttaattatttcaaaaaggtatatttttgaattcc 8164502  T
Q  100 cttatctttcatacttttcacttgtatgcgtacgcgcctaaatgagttatatttatgcttgtgaccaagcaagtgtttctc 180  Q
     || ||||||||||||||  ||| |||| || || | ||||||||   |||||||||| |||||  || ||||||||||||    
T  8164501 tttctctttcatacttttttcttttatgtgtgcgtgtctaaatgacacatatttatgcatgtgattaaacaagtgtttctc 8164421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 13520482 - 13520518
Alignment:
Q  61 atcatttaattatttcaaaaagatatattatttaatt 97  Q
    |||||| |||||||||||||| |||||||||||||||    
T  13520482 atcattaaattatttcaaaaatatatattatttaatt 13520518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 13610017 - 13610053
Alignment:
Q  61 atcatttaattatttcaaaaagatatattatttaatt 97  Q
    |||||| |||||||||||||| |||||||||||||||    
T  13610017 atcattaaattatttcaaaaatatatattatttaatt 13610053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 29827660 - 29827840
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaa-ttatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaattta 99  Q
    |||||| ||||||||| |||| |||| ||| |||||| || ||||| ||||| |||||||||| ||||||||||||||||| ||||||||||| |||| |    
T  29827660 atacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattcaattca 29827759  T
Q  100 cttatctttcatacttttcacttgtatgcgtacgcgcctaaatgagttatatttatgcttgtgaccaagcaagtgtttctc 180  Q
     || ||||||||||||||| ||| |||| |   | | |||||||| ||||||||||| ||||||  |||||||||| ||||    
T  29827760 tttctctttcatacttttctcttttatgtgagtgtgtctaaatgatttatatttatggttgtgattaagcaagtgtatctc 29827840  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 25175313 - 25175488
Alignment:
Q  5 ttgtatggacacaacacgaaatcaaatt-atttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatttactta 103  Q
    ||||||||||||||||| |||||||| | ||||||| |||  |||||| ||||||||||||||||||||||||||||| | ||||   |||| |   ||     
T  25175313 ttgtatggacacaacaccaaatcaaaatcatttaggcacatcctcattaaaatatctatcatttaattatttcaaaaa-aaatat--attaagtcttttc 25175409  T
Q  104 tctttcatacttttcacttgtatgcgtacgcgcctaaatgagttatatttatgcttgtgaccaagcaagtgtttctcttgc 184  Q
    |||||||||||||   ||| ||||  |  | | |||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  25175410 tctttcatacttt--ccttttatgtatgtgagtctaaatgacttatatttatgcttgtgaccaatcaagtgtgtctcttgc 25175488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 31017236 - 31017168
Alignment:
Q  28 aaattatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatt 97  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||    
T  31017236 aaattatttaggtacacactcattaaaatatctatcatttaattaatt-aaaaatatatattatttaatt 31017168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 37493189 - 37493302
Alignment:
Q  15 acaacacgaaatcaa-attatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatttacttatctttcatac 113  Q
    ||||||| ||||||| || ||||||| ||||| ||||| ||| |||||||||||||| |||||||||||||||||||||| |||   || |||| |||||    
T  37493189 acaacaccaaatcaatatcatttaggcacacattcattaaaacatctatcatttaataatttcaaaaagatatattatttcattcctttctcttccatac 37493288  T
Q  114 ttttcacttgtatg 127  Q
    ||||| ||| ||||    
T  37493289 ttttcccttttatg 37493302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 43449606 - 43449521
Alignment:
Q  31 ttatttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatttacttatctttcatactttt 117  Q
    ||||||||| ||||||||||  |||||  |||||||||||||||| ||||| | |||||||||||||   || ||||||||||||||    
T  43449606 ttatttaggcacacactcata-aaatacatatcatttaattattttaaaaatacatattatttaattattttctctttcatactttt 43449521  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 15965216 - 15965275
Alignment:
Q  12 gacacaacacgaaatcaaattatttagggacacactcattcaaatatctatcatttaatt 71  Q
    |||||||||| ||||||||| ||||||  ||||| ||||| |||||| ||||||||||||    
T  15965216 gacacaacaccaaatcaaatcatttagacacacattcattaaaatatttatcatttaatt 15965275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 43793160 - 43793277
Alignment:
Q  1 atacttgtatggacacaacacgaaatcaaatt-atttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaattta 99  Q
    ||||||||||||| ||| ||| |||||||| | ||||||| || |||||||| | | ||||||||||||||||||||||||||||||| |||||||||      
T  43793160 atacttgtatggatacatcactaaatcaaaatcatttaggcacgcactcattaatacatctatcatttaattatttcaaaaagatataatatttaattct 43793259  T
Q  100 cttatctttcatactttt 117  Q
     || ||||||||||||||    
T  43793260 tttctctttcatactttt 43793277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 42507322 - 42507189
Alignment:
Q  43 acactcattcaaatatctatcatttaattatttcaaaaagata-tattatttaatttacttatctttcatacttttcacttgtatgcgtacgcgcctaaa 141  Q
    |||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||   || | ||||||||||||  ||| |||  ||  |||| ||||    
T  42507322 acactcattataatatctattatttaattatttcaaaaagatattattatttaattcttttctttttcatacttttttcttttatatgt--gcgcttaaa 42507225  T
Q  142 tgagttatatttatgcttgtgaccaagcaagtgttt 177  Q
    ||| ||||||||||| || |||||||  ||||||||    
T  42507224 tgacttatatttatgtttctgaccaaagaagtgttt 42507189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 20680142 - 20680105
Alignment:
Q  60 tatcatttaattatttcaaaaagatatattatttaatt 97  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  20680142 tatcatttaattatttaaaaaagaaatattatttaatt 20680105  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 43793998 - 43794030
Alignment:
Q  150 atttatgcttgtgaccaagcaagtgtttctctt 182  Q
    |||||||||||||||||||||||||| ||||||    
T  43793998 atttatgcttgtgaccaagcaagtgtatctctt 43794030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 12748449 - 12748395
Alignment:
Q  41 acacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaa 95  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  12748449 acacattcattaaaatatctatcatttaattatttcaaaaagatatattttttaa 12748395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 3272467 - 3272553
Alignment:
Q  12 gacacaacacgaaatcaaatt-atttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattatttaatt 97  Q
    |||||||||| |||||||| | ||||||  | | ||||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  3272467 gacacaacaccaaatcaaaatcatttagacatatactcattaaaatatctattatttaattatttcaaaaatatatattatttaatt 3272553  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 3272535 - 3272578
Alignment:
Q  53 aaatatctatcatttaattatttcaaaaagatatattatttaat 96  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||    
T  3272535 aaatatatattatttaattatttcaaaaatatatattatttaat 3272578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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