View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14458_low_1 (Length: 274)
Name: NF14458_low_1
Description: NF14458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14458_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 42292423 - 42292662
Alignment:
| Q |
17 |
actctttcggtcgtttggttgaaccattagcaagccaacgtccatggatggtcactacaggaaaccatgatgttgagaagattccagttgtccacgaaga |
116 |
Q |
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| T |
42292423 |
actctttcggtcgtttggttgaaccattagcaagccaacgtccatggatggtcactacaggaaaccatgatgttgagaagattccagttgtccacgaaga |
42292522 |
T |
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| Q |
117 |
gccattcacagcatacaatgcaaggtggcaaatgccatttgaagaaagtggatcagattctaacctttattattcttttgatgtgtccggtgttcatgtt |
216 |
Q |
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| T |
42292523 |
gccattcacagcatacaatgcaaggtggcaaatgccatttgaagaaagtggatcagattctaacctttattattcttttgatgtgtctggtgttcatgtt |
42292622 |
T |
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| Q |
217 |
atcatgttgggttcttataccgattttgcaccggattctt |
256 |
Q |
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| T |
42292623 |
atcatgttgggttcttataccgattttgcaccggattctt |
42292662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 40336267 - 40336191
Alignment:
| Q |
146 |
aaatgccatttgaagaaagtggatcagattctaacctttattattcttttgatgtgtccggtgttcatgttatcatg |
222 |
Q |
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| T |
40336267 |
aaatgccgtttgaggaaagtggatcaacttcaaatctctattattcatttgaagttgcaggtgttcatgttatcatg |
40336191 |
T |
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