View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14458_low_3 (Length: 257)

Name: NF14458_low_3
Description: NF14458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14458_low_3
NF14458_low_3
[»] chr8 (3 HSPs)
chr8 (90-257)||(5461803-5461970)
chr8 (90-124)||(2552409-2552443)
chr8 (90-124)||(3158060-3158094)
[»] chr2 (2 HSPs)
chr2 (90-128)||(44465113-44465151)
chr2 (92-128)||(42928933-42928969)
[»] chr6 (1 HSPs)
chr6 (90-128)||(8752823-8752861)
[»] chr5 (1 HSPs)
chr5 (90-124)||(16308567-16308601)
[»] chr1 (2 HSPs)
chr1 (90-124)||(44269097-44269131)
chr1 (90-123)||(44268891-44268924)
[»] chr4 (1 HSPs)
chr4 (90-123)||(55017743-55017776)
[»] chr3 (2 HSPs)
chr3 (90-123)||(30700299-30700332)
chr3 (90-123)||(31017766-31017799)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 5461970 - 5461803
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaagtctttcatttattataacaaccgtatacaaaatagtaacatccataaccataatcaaaactggtt 189  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5461970 cacgcgaacttacggtgacgatttacatatttaagtctttcatttattataacaacagtatacaaaatagtaacatccataaccataatcaaaactggtt 5461871  T
Q  190 tttcttagattttggtataacttctcgcatctgttaatcctttcttcaataatatctcattagttttt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5461870 tttcttagattttggtataacttctcgcatctgttaatcctttcttcaataatatctcattagttttt 5461803  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 2552443 - 2552409
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaag 124  Q
    ||||| |||||||||||||||||||||||||||||    
T  2552443 cacgcaaacttacagagacgatttacatatttaag 2552409  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 3158060 - 3158094
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaag 124  Q
    ||||||||||||||| |||||||||||||||||||    
T  3158060 cacgcgaacttacagggacgatttacatatttaag 3158094  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 44465113 - 44465151
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaagtctt 128  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  44465113 cacgcgaacttacagggacgatttacatatttaagtctt 44465151  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 42928969 - 42928933
Alignment:
Q  92 cgcgaacttacagagacgatttacatatttaagtctt 128  Q
    |||||||||||||||||  ||||||||||||||||||    
T  42928969 cgcgaacttacagagaccttttacatatttaagtctt 42928933  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 8752823 - 8752861
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaagtctt 128  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  8752823 cacgccaaattacagagacgatttacatatttaagtctt 8752861  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 16308601 - 16308567
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaag 124  Q
    ||||||||||||||| |||||||||||||||||||    
T  16308601 cacgcgaacttacagggacgatttacatatttaag 16308567  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 44269097 - 44269131
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaag 124  Q
    |||||||| ||||||||||||||||||||||||||    
T  44269097 cacgcgaatttacagagacgatttacatatttaag 44269131  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 44268924 - 44268891
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaa 123  Q
    ||||||||||||||| ||||||||||||||||||    
T  44268924 cacgcgaacttacagggacgatttacatatttaa 44268891  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 55017776 - 55017743
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaa 123  Q
    ||||||||||||||| ||||||||||||||||||    
T  55017776 cacgcgaacttacagggacgatttacatatttaa 55017743  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 30700332 - 30700299
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaa 123  Q
    |||||||||||| |||||||||||||||||||||    
T  30700332 cacgcgaacttaaagagacgatttacatatttaa 30700299  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 31017766 - 31017799
Alignment:
Q  90 cacgcgaacttacagagacgatttacatatttaa 123  Q
    |||||||||||||| |||||||||||||||||||    
T  31017766 cacgcgaacttacacagacgatttacatatttaa 31017799  T

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