View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14459_high_10 (Length: 309)

Name: NF14459_high_10
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14459_high_10
NF14459_high_10
[»] chr2 (1 HSPs)
chr2 (14-309)||(8925476-8925773)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 8925476 - 8925773
Alignment:
Q  14 caaagggcataaacgaaggaattgaagattaaaactttaaaatatagtctttatgacatgaactggatgacatgcggacaattacaaagacttatctctt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8925476 caaagggcataaacgaaggaattgaagattaaaactttaaaatatagtctttatgacatgaactggatgacatgcggacaactacaaagacttatctctt 8925575  T
Q  114 tagttaagttggactacataggtggaaaaaatatttaatatgattaatgaattgcatgatatattttataataaaaaacattatttgtttctttataatt 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8925576 tagttaagtcggactacataggtggaaaaaatatttaatatgattaatgtattgcatgatatattttataataaaaaacattatttgtttctttataatt 8925675  T
Q  214 g--tttatgaacaacaacaattttatattttgaaatgataaaaatcacataaaataaattaatataagcaaaactaaatccagtcatttataggcatc 309  Q
    |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8925676 gtttttatggacaacaacaattttatattttgaaatgataaaaatcacataaaataaattaatataagcaaaacaaaatccagtcatttataggcatc 8925773  T

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