View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_high_17 (Length: 236)
Name: NF14459_high_17
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_high_17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 12956392 - 12956612
Alignment:
| Q |
16 |
taatatacatatgctacttatcaagttaattctattgagtcaaaaagaagttaattatatgattaactaattaatttattgattacattttgattttgat |
115 |
Q |
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| T |
12956392 |
taatatacatatgctacttatcaagttaattctattgagtcaaaaagaagttaattatatgattaactaattaatttattgattacattttgattttgat |
12956491 |
T |
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| Q |
116 |
catgtgaagagaaaaagtgcacataccaaagaataagcgttatatatttatgagaggaaatggaagaggaaaaactgccattgtttggtctgaaagctcc |
215 |
Q |
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| T |
12956492 |
catgtgaagagaaaaagtgcacataccaaagaataagcgttatatatttatgagaggaaatggaagaggaaaaactgccattgtttggtctgaaagctcc |
12956591 |
T |
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| Q |
216 |
tctgacaacatagcttctgcc |
236 |
Q |
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| T |
12956592 |
tctgacaacatagcttctgcc |
12956612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 14242115 - 14241987
Alignment:
| Q |
108 |
attttgatcatgtgaagagaaaaagtgcacataccaaagaataagcgttatatatttatgagaggaaatggaagaggaaaaactgccattgtttggtctg |
207 |
Q |
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| T |
14242115 |
attttaatcacgtgaagagaaaaagtgcacataccaaagaataagcgttatacattcatgagaggaaatggaagaggaaaaactgcaattgtttggtccg |
14242016 |
T |
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| Q |
208 |
aaagctcctctgacaacatagcttctgcc |
236 |
Q |
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| T |
14242015 |
aaagctcctctaacaacatagcttctgcc |
14241987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 14242162 - 14242117
Alignment:
| Q |
33 |
ttatcaagttaattctattgagtcaaaaagaagttaattatatgatt |
79 |
Q |
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| T |
14242162 |
ttatcaagttaattatattaagtcaaaa-gaagttaattatatgatt |
14242117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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