View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_high_4 (Length: 426)
Name: NF14459_high_4
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 14743483 - 14743881
Alignment:
| Q |
12 |
tgagatgaagaataataatatatttggatggaaaagtgagagatagggaagtacgaaccaccaacagagaagaagatgagattgaagtaaaattcaacgg |
111 |
Q |
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| T |
14743483 |
tgagatgaagaataataatatatttggatggaaaagtgagagatagggaagtacgaaccaccaacagagaagaagatgagattgaagtaaaattcaacgg |
14743582 |
T |
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| Q |
112 |
tgtcatcgatgttgccaacnnnnnnnncgcattcagcgagagcaggaaaaaagagatgtaagagggatttgaagggagcgaagaaacgattaacctcttc |
211 |
Q |
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| T |
14743583 |
tgtcatcgatgttgccaacttttttt-cgcattcagcgagagcaggaaaaaagagatgtaagagggatttgaagggagcgaagaaacgattaacctcttc |
14743681 |
T |
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| Q |
212 |
ttcgaggaggcgttttatctctgcttcggagaaggttgatttgatcaggcgagccttctcctcgatagtcaggccggatacttccgctttcgtcaggcca |
311 |
Q |
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| T |
14743682 |
ttccaggaggcgttttatctctgcttcggagaaggttgatttgatcaggcgagccttctcctcgatagtcaggccagatacttccgctttcgtcaggcca |
14743781 |
T |
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| Q |
312 |
aacctcttgcttacgatgttgttgatcacaatgcgaaccactggattaagtccgtcgtcggcggcgggaacgccaaagagagac--gtctgtattatatg |
409 |
Q |
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| T |
14743782 |
aacctcttgcttacgatgttgttgatcacaatgcgaaccaccggattaagtccgtcgtcggcggcgggaacgccaaagagagacatgtctgtattatatg |
14743881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 206 - 368
Target Start/End: Original strand, 14746601 - 14746763
Alignment:
| Q |
206 |
ctcttcttcgaggaggcgttttatctctgcttcggagaaggttgatttgatcaggcgagccttctcctcgatagtcaggccggatacttccgctttcgtc |
305 |
Q |
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| T |
14746601 |
ctcttcttcgatgaggcgagtaatctctgcttcagagaaggttgatttgatcaggcaagccttctcctcgatggtcaggccggatacctccgctttcgtc |
14746700 |
T |
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| Q |
306 |
aggccaaacctcttgcttacgatgttgttgatcacaatgcgaaccactggattaagtccgtcg |
368 |
Q |
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| T |
14746701 |
aggccaaacctcttgcttacgatgttgttgatcacaatgctagccaccggatgaattccgtcg |
14746763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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