View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_low_18 (Length: 239)
Name: NF14459_low_18
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 3427203 - 3427413
Alignment:
| Q |
11 |
aagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatctatgaaaaggaaaaaagagccaagaactatgaacttg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3427203 |
aagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatctatgaaaaggaaaaaagagccaagaattatgaacttg |
3427302 |
T |
|
| Q |
111 |
aagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatttgcttgttgtatgaaactacgtggatcactggaaggt |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||| |
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| T |
3427303 |
aagatcaagattagggaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtttgcttgttgtatgaaactacgtggatcattggatggt |
3427402 |
T |
|
| Q |
211 |
aaggctttcat |
221 |
Q |
| |
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||||||||||| |
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| T |
3427403 |
aaggctttcat |
3427413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 3433394 - 3433604
Alignment:
| Q |
11 |
aagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatctatgaaaaggaaaaaagagccaagaactatgaacttg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433394 |
aagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatctatgaaaaggaaaaaagagccaagaactatgaacttg |
3433493 |
T |
|
| Q |
111 |
aagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatttgcttgttgtatgaaactacgtggatcactggaaggt |
210 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||| |||| ||| |
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| T |
3433494 |
aagatcaagattaggaaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtttgcttgttgtatgaaattacgtggatcattggatggt |
3433593 |
T |
|
| Q |
211 |
aaggctttcat |
221 |
Q |
| |
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||||||||||| |
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| T |
3433594 |
aaggctttcat |
3433604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 11912406 - 11912198
Alignment:
| Q |
11 |
aagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatctatgaaaaggaaaaaagagccaagaactatgaacttg |
110 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11912406 |
aagcaaaggctggatcattgatcaaactacccaagattctctcatggaaataaaggtaccatctatgaaaaggaaaaaagagccaagagttatgaacttg |
11912307 |
T |
|
| Q |
111 |
aagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatttgcttgttgtatgaaactacgtggatcactggaaggt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||| |
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| T |
11912306 |
aagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtttgcttgttgtatgaaactacgtggatcattggatggt |
11912207 |
T |
|
| Q |
211 |
aaggctttc |
219 |
Q |
| |
|
|| |||||| |
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|
| T |
11912206 |
aatgctttc |
11912198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 11897073 - 11896863
Alignment:
| Q |
11 |
aagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatctatgaaaaggaaaaaagagccaagaactatgaacttg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||| |
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|
| T |
11897073 |
aagcaaaggttggatcattgatcaagctacctaagatcctttcatagaaataaaggtaccacctatgaaaaggaaaaaagagccaagagccatgaacttg |
11896974 |
T |
|
| Q |
111 |
aagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatttgcttgttgtatgaaactacgtggatcactggaaggt |
210 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||||||||| |||| ||| |
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|
| T |
11896973 |
aagatcaaggttagggaagccaacttgggaatatgcaccatcacaataagcacagtggacgtttgcttgttgcatgaaactacgtggatcattggatggt |
11896874 |
T |
|
| Q |
211 |
aaggctttcat |
221 |
Q |
| |
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||||||||||| |
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|
| T |
11896873 |
aaggctttcat |
11896863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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