View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_low_2 (Length: 650)
Name: NF14459_low_2
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 82 - 310
Target Start/End: Original strand, 8169775 - 8170003
Alignment:
| Q |
82 |
caaaatgacatcaacagaacaggattggtcgattggaatattttcaattgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaa |
181 |
Q |
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| T |
8169775 |
caaaatgacatcaacagaacatgattggtcgattggaatattttcaactgaagaaggaatgaaaaggatataaagaaagggaatggactgacaatgacaa |
8169874 |
T |
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| Q |
182 |
tgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcatttagaagttggatcgatgacatatctgatgggtttcagc |
281 |
Q |
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| T |
8169875 |
tgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttcagttagaagttggatcggtgacatatctgatgggtttcagc |
8169974 |
T |
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| Q |
282 |
caagaagattgtagagggagaacgttttt |
310 |
Q |
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| T |
8169975 |
caagaagattgtagagggagaactttttt |
8170003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 512 - 650
Target Start/End: Original strand, 8172670 - 8172808
Alignment:
| Q |
512 |
tatatatatatcagcatagcaaggtaacacaacaaagcgtggtggctgcaatcctattattatgttttgcaatggctgaaaaacaaaataacatgctgaa |
611 |
Q |
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| T |
8172670 |
tatatatatatcagcatagcaaggtaacataacaaagcgtggtggctgcaatcatattattatcttttgcaatggccgaaaaacaaaataacatgctgaa |
8172769 |
T |
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| Q |
612 |
caagaactatggtgtgaatcaagatgatgcatctctagt |
650 |
Q |
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| T |
8172770 |
caagaactatggtgtgaatcaagatgatgcatctctagt |
8172808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 537 - 650
Target Start/End: Original strand, 7591014 - 7591124
Alignment:
| Q |
537 |
aacacaacaaagcgtggtggctgcaatcctattattatgttttgcaatggctgaaaaacaaaataacatgctgaacaagaactatggtgtgaatcaagat |
636 |
Q |
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| T |
7591014 |
aacacaacaaagcgtggtggcttcaatcctattatc---tttagcaatggctgaaaaacaaaataacgtgctgaacaagaactatggtgtgaatcaagat |
7591110 |
T |
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| Q |
637 |
gatgcatctctagt |
650 |
Q |
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| T |
7591111 |
gatgcatctctagt |
7591124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 8169658 - 8169709
Alignment:
| Q |
32 |
gtaaaacttatctaaggtgagtataacttcactttaaccaaagcaagctgca |
83 |
Q |
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| T |
8169658 |
gtaaaacttatctaaggtgagtataacttcactttaaccaaagcaagctgca |
8169709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8167901 - 8167941
Alignment:
| Q |
1 |
cataagagatatttgttattatattttaatggtaaaactta |
41 |
Q |
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| T |
8167901 |
cataagagatatttgttattatattttaatggtaaaactta |
8167941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 308 - 393
Target Start/End: Original strand, 8172461 - 8172544
Alignment:
| Q |
308 |
tttatattcccgtcaatatttctatgtacaannnnnnnnnngttgtaggttttagaacctagaaaag-tattaatatattagttttt |
393 |
Q |
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| T |
8172461 |
tttatattcccgtcaatatttctatgtacaatttttttt---ttgtaggttttagaacctagaaaagttattaatatattagttttt |
8172544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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