View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_low_20 (Length: 234)
Name: NF14459_low_20
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 8926373 - 8926143
Alignment:
| Q |
2 |
aacattagcaaaaagcctttaaacaacaaaacatatatatgcatgtttagaatcagagtgaacttaacgaggtgacacgacacatcgtgattctgtcaag |
101 |
Q |
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| T |
8926373 |
aacattagcaaaaagcctttaaacaacaaaacatatatatgcatgtttagaatcaaagtgaacttaacgaggtgacacgacacatcgtgattctgtcaag |
8926274 |
T |
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| Q |
102 |
ttcaccgttaatctaaacatgcac--------agagaaattttgatgatgtatagaactagcacctcaaagaagccccagttctcacaagcatctttgat |
193 |
Q |
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| T |
8926273 |
ttcaccgttaatctaaacatgcactgtattaaagagaaattttgatgatgtatagaactagtacctcaaagaagccccagttctcacaagcatctttgat |
8926174 |
T |
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| Q |
194 |
catctccatggtagcttttctctcttctgtg |
224 |
Q |
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| T |
8926173 |
catctccatggtagcttttctctcttctgtg |
8926143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 37628757 - 37628696
Alignment:
| Q |
156 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctc |
217 |
Q |
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| T |
37628757 |
acctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctc |
37628696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 36872707 - 36872765
Alignment:
| Q |
156 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttct |
214 |
Q |
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| T |
36872707 |
acctcaaagaatccccaattctcacaagcatccttaattttctccatggtatcttttct |
36872765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 55522810 - 55522761
Alignment:
| Q |
156 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggt |
205 |
Q |
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| T |
55522810 |
acctcaaagaaaccccaattttcacaagcatcttttatgatctccatggt |
55522761 |
T |
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