View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_low_21 (Length: 222)
Name: NF14459_low_21
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 2797924 - 2798117
Alignment:
| Q |
17 |
agttgaagtcaaaaaatggatggtttatttagattgtctccgtatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797924 |
agttgaagtcaaaaaatggatggtttatttagattgtctccttatttattcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatat |
2798023 |
T |
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| Q |
117 |
gctgtgaattgtgtgttgatgtttcnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
210 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2798024 |
gctgtgaattgtgtgttgatgtttctttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
2798117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 2874170 - 2873977
Alignment:
| Q |
17 |
agttgaagtcaaaaaatggatggtttatttagattgtctccgtatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874170 |
agttgaagtcaaaaaatggatggtttatttagattgtctccgtatgtattcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatat |
2874071 |
T |
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| Q |
117 |
gctgtgaattgtgtgttgatgtttcnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
2874070 |
gctgtgaattgtgtgttgatgtttctttttttcttgacgcaaatgtgttgatgtttctagagtaacttagacttgtcagtttatagtattttct |
2873977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 3146180 - 3146349
Alignment:
| Q |
41 |
ttatttagattgtctccgtatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgctgtgaattgtgtgttgatgttt |
140 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3146180 |
ttatttaaattgtctccgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
3146279 |
T |
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| Q |
141 |
cnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3146280 |
gtttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
3146349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 2847354 - 2847230
Alignment:
| Q |
17 |
agttgaagtcaaaaaatggatggtttatttagattgtctccgtatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatat |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2847354 |
agttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatat |
2847255 |
T |
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| Q |
117 |
gctgtgaattgtgtgttgatgtttc |
141 |
Q |
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||||||||||||||||||||||||| |
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| T |
2847254 |
gctgtgaattgtgtgttgatgtttc |
2847230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 2888406 - 2888237
Alignment:
| Q |
41 |
ttatttagattgtctccgtatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatatgctgtgaattgtgtgttgatgttt |
140 |
Q |
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||||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2888406 |
ttatttaaattgtcttcgcatctaatcttgtacatttattgagcatggagaaattcgggccaaagatggtacatatgatgtgaattgtgtgttgatgttt |
2888307 |
T |
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| Q |
141 |
cnnnnnnncttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2888306 |
gtttttttcttgacgcaaatgtgttgatgtttctagagtaacttggacttgtgagtttatagtattttct |
2888237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 3160842 - 3160966
Alignment:
| Q |
17 |
agttgaagtcaaaaaatggatggtttatttagattgtctccgtatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatat |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3160842 |
agttgaagtcaaaaaatggatggtttatttagattgtctccatatctaatcttgtacatttattgagcatgcagaaattcgggccaaagatggtacatat |
3160941 |
T |
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| Q |
117 |
gctgtgaattgtgtgttgatgtttc |
141 |
Q |
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||||||||||||||||||||||||| |
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| T |
3160942 |
gctgtgaattgtgtgttgatgtttc |
3160966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 3160953 - 3161003
Alignment:
| Q |
160 |
tgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
210 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
3160953 |
tgtgttgatgtttctagagtaacttagacttgtgagtttatagtattttct |
3161003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 2847243 - 2847193
Alignment:
| Q |
160 |
tgtgttgatgtttctagagtaacttggacttgtgagtttatagtatattct |
210 |
Q |
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|
||||||||||||||||||||||||| ||| |||||||||||||||| |||| |
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| T |
2847243 |
tgtgttgatgtttctagagtaacttagacatgtgagtttatagtattttct |
2847193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 2888890 - 2888860
Alignment:
| Q |
17 |
agttgaagtcaaaaaatggatggtttattta |
47 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2888890 |
agttgaagtcaaaaaatggatggtttattta |
2888860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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