View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_low_22 (Length: 218)
Name: NF14459_low_22
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 2585463 - 2585656
Alignment:
| Q |
9 |
aggagcagagaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
108 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2585463 |
aggatcagtgaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
2585562 |
T |
|
| Q |
109 |
ggtagcaggatggttatgtatcatggtgctaaaggtggtaccgtttattcagttggatattcattagcaactgctggatcgtaagtataccttt |
202 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
2585563 |
ggtagcagaatggttatgtatcatggtgctaaaggtggtaccgtttattcagttggattttcattagcaattgctggatcgtaagtataccttt |
2585656 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 2619154 - 2619347
Alignment:
| Q |
9 |
aggagcagagaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
108 |
Q |
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|||| ||| ||| ||||||||||||||||| |||||||| ||||| | |||||||||||||||| || ||||||| |||||||||| ||||| |||||| |
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| T |
2619154 |
aggatcagtgaaattgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattat |
2619253 |
T |
|
| Q |
109 |
ggtagcaggatggttatgtatcatggtgctaaaggtggtaccgtttattcagttggatattcattagcaactgctggatcgtaagtataccttt |
202 |
Q |
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| T |
2619254 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgttggatattcaatagcacttggtggatcgtaagtataccttt |
2619347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 2678231 - 2678038
Alignment:
| Q |
9 |
aggagcagagaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
108 |
Q |
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|||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| | | |||| |
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| T |
2678231 |
aggatcagtgaagttgggattgaaacaaggcttagctaaaggcttggccataggaagcaatggtgttgtttttgctatatggtcctttatgtccttttat |
2678132 |
T |
|
| Q |
109 |
ggtagcaggatggttatgtatcatggtgctaaaggtggtaccgtttattcagttggatattcattagcaactgctggatcgtaagtataccttt |
202 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| || | | | |||||| ||||||||| || ||||| ||||||||| |||| |
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| T |
2678131 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtatttgctgttggagcatcattagcacttggtggattgtaagtatatcttt |
2678038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 2601223 - 2601076
Alignment:
| Q |
18 |
gaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattatggtagcagg |
117 |
Q |
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||||||||||||||||||||| |||||||| ||||| | |||||||||||||||| || |||||| ||||||| || ||| | |||||||||||||| |
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| T |
2601223 |
gaagttgggattgaaacaaggcttagctaaaggcttaggcataggaagcaatggtcttgtttttgccgtatggtcgttgatgtcctattatggtagcaga |
2601124 |
T |
|
| Q |
118 |
atggttatgtatcatggtgctaaaggtggtaccgtttattcagttgga |
165 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2601123 |
atggtcatgtatcatggtgctaaaggtggtaccgtttattcagttgga |
2601076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 2573753 - 2573597
Alignment:
| Q |
9 |
aggagcagagaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
108 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||| || || || ||| | | |||||||||||||||| || ||||||| |||||||||| ||| |||||||| |
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| T |
2573753 |
aggatcagtgaaattgggattgaaacaaggcttggcgaaaggcataggcataggaagcaatggtcttgtttttgctgtatggtctttgatgtcatattat |
2573654 |
T |
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| Q |
109 |
ggtagcaggatggttatgtatcatggtgctaaaggtggtaccgtttattcagttgga |
165 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2573653 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtttattcagttgga |
2573597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 2646013 - 2645866
Alignment:
| Q |
9 |
aggagcagagaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
108 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||||| || || ||||||||||||||||||||| |||||| ||| ||||||||| | |||||| |
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| T |
2646013 |
aggatcagtgaagttgggattgaaacaaggcttagctaaaggttttgccataggaagcaatggtgttgtttttgcaatagcttcttttatgacttattat |
2645914 |
T |
|
| Q |
109 |
ggtagcaggatggttatgtatcatggtgctaaaggtggtaccgtttat |
156 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
2645913 |
ggtagcagaatggtcatgtatcatggtgctaaaggtggtactgtttat |
2645866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 2431993 - 2432163
Alignment:
| Q |
28 |
ttgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattatggtagcaggatggttatgt |
127 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||||| | ||||||||||||||| || || |||||||||| ||||| |||| |
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| T |
2431993 |
ttgaaacaaggtttggctaaaggcttagccataggaagcaatggtgttgtctatgctatatggtctttaatattctactatggtagcataatggtcatgt |
2432092 |
T |
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| Q |
128 |
atcatggtgctaaaggtggtaccgtttattcagttggatattcattagcaactgctggatcgtaagtatac |
198 |
Q |
| |
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|||||||||||||||| ||||| || | | ||||||| ||||||||| || ||||| |||||||||| |
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| T |
2432093 |
atcatggtgctaaaggcggtacagtatttgtagttggagtaacattagcaattggtggattgtaagtatac |
2432163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 2448009 - 2448149
Alignment:
| Q |
9 |
aggagcagagaagttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattat |
108 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| || | ||| ||||| || ||||||||||||| | || | | | ||||| ||||||| |||||||| |
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| T |
2448009 |
aggatcagtgaagttgggattgaaacaaggcttggttaaaggcttagctataggaagcaatgctattgtgtatattcaatggtgttttatgtcatattat |
2448108 |
T |
|
| Q |
109 |
ggtagcaggatggttatgtatcatggtgctaaaggtggtac |
149 |
Q |
| |
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||||| || ||||| |||||||||||||||||||||||||| |
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| T |
2448109 |
ggtagtagaatggtcatgtatcatggtgctaaaggtggtac |
2448149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 33801858 - 33801957
Alignment:
| Q |
22 |
ttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattatggtagcaggatgg |
121 |
Q |
| |
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||||||||||||||||| |||||||| ||||| |||||||||||||||| || ||||||| |||||||||| ||||| |||||||||||||| |||| |
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| T |
33801858 |
ttgggattgaaacaaggcttagctaaaggcttaagcataggaagcaatggtcttctttttgctgtatggtctttgatggcctattatggtagcagaatgg |
33801957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 53664775 - 53664676
Alignment:
| Q |
22 |
ttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattatggtagcaggatgg |
121 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||||| |||||| || ||||||| |||||||||| ||||| |||||||||||||| |||| |
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| T |
53664775 |
ttgggattgaaacaaggcttagctaaaggcttaagcataggaagtaatggtcttctttttgctgtatggtctttgatggcctattatggtagcagaatgg |
53664676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 17874351 - 17874208
Alignment:
| Q |
22 |
ttgggattgaaacaaggtttagctaagggcttggccataggaagcaatggtgttaattttgctatatggtcttttatggcatattatggtagcaggatgg |
121 |
Q |
| |
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||||| || |||||||| |||||||| || || || || ||||||||||||||| ||||| || ||||| || ||| ||||||||||||| ||| |
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| T |
17874351 |
ttgggtttaaaacaaggattagctaaaggtttagcaattggaagcaatggtgttgtctttgcaatttggtccttcatgtgctattatggtagcaaattgg |
17874252 |
T |
|
| Q |
122 |
ttatgtatcatggtgctaaaggtggtaccgtttattcagttgga |
165 |
Q |
| |
|
|||||||||||||||||||||| || || |||| | |||||||| |
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|
| T |
17874251 |
ttatgtatcatggtgctaaaggagggacagtttttgcagttgga |
17874208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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