View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_low_25 (Length: 201)
Name: NF14459_low_25
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 30757888 - 30757722
Alignment:
| Q |
16 |
ataaacaaacgaaggtgatgaaaattgatttataaatttgttggtgttgttgttctctcagcttcttgattttgcagagtatttttcatttggaactttt |
115 |
Q |
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| T |
30757888 |
ataaacaaacgaaggtgatgaaaattgatttaaaaatttgttggtgttgttgttctctcagcttcttgattttgcagagtttttttcatttagaactttt |
30757789 |
T |
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| Q |
116 |
gaattttgattattatatactttagttttggattaattagttgatgattttgaaaagaaatataaaa |
182 |
Q |
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| T |
30757788 |
gaattttgattattatatactttagttttggattaattagttgatgattttgaaaagaaatataaaa |
30757722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 18192528 - 18192687
Alignment:
| Q |
16 |
ataaacaaacgaaggtgatgaaaattgatttataaatttgttggtgttgttgttctctcagcttcttgattttgcagagtatttttcatttggaactttt |
115 |
Q |
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| T |
18192528 |
ataaacaaacgaaggtgatgaaaattgatttaaaaatttgttgttgttgttctcctctaagcctcttgattttgtagagttcttttcatttagaactttt |
18192627 |
T |
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| Q |
116 |
gaattttgattattatatactttag-ttttggattaattagttgatgattttgaaaagaa |
174 |
Q |
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| T |
18192628 |
gaattttgattattatatgctttagtttttggatcaattagttgatgattttgaaaagaa |
18192687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 31856688 - 31856764
Alignment:
| Q |
22 |
aaacgaaggtgatgaaaattgatttataaatttgttggtgttgttgttctctcagcttcttgattttgcagagtattttt |
101 |
Q |
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| T |
31856688 |
aaacgaaggtgatgaaaacttatttaaaaatttgt---tgttgttgctctctcaacttcatgattttgtagagttttttt |
31856764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 36164099 - 36164259
Alignment:
| Q |
16 |
ataaacaaacgaaggtgatgaaaattgatttataaatttgttggtgttgttgttctctcagcttcttgattttgcagagtatttttcatttggaactttt |
115 |
Q |
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| T |
36164099 |
ataaacaaacgaaggtgatgaaaattgatttaaaaatttgttgttgttgttctcctctcagcttcttgattttgtagacttcttttcatttagaactttt |
36164198 |
T |
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| Q |
116 |
gaattttgattattatatactttag-ttttggattaattagttgatgattttgaaaagaaa |
175 |
Q |
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| T |
36164199 |
gaattttgattattatatgctttagtttttggatcaattagttgatgattttgaaaagaaa |
36164259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 32564979 - 32564871
Alignment:
| Q |
36 |
aaaattgatttataaatttgttggtgttgttgttctctcagcttcttgattttgcagagtatttttcatttggaacttttgaattttgattattatatac |
135 |
Q |
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| T |
32564979 |
aaaattgatttaaaaatttgttgttgttgttctcctctaagcttcttgattttgtagagttcttttcatttagaaattttgaattttgattattatatgc |
32564880 |
T |
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| Q |
136 |
tttagtttt |
144 |
Q |
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||||||||| |
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| T |
32564879 |
tttagtttt |
32564871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 5225249 - 5225314
Alignment:
| Q |
107 |
ggaacttttgaattttgattattatatactttagttttggattaattagttgatgattttgaaaag |
172 |
Q |
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| T |
5225249 |
ggaacttttggattttgattattatatgttatagttttggattaattagttgatagttttgaaaag |
5225314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 4754654 - 4754719
Alignment:
| Q |
103 |
atttggaacttttgaattttgattattatatactttagttttggattaattagttgatgattttgaaaag |
172 |
Q |
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| T |
4754654 |
atttggaacttttgaattttgatt----tatgttttagttttggattaattggttgatggttttgaaaag |
4754719 |
T |
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