View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14459_low_3 (Length: 537)
Name: NF14459_low_3
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 48 - 521
Target Start/End: Original strand, 45776976 - 45777455
Alignment:
| Q |
48 |
atcctcccaaagagtatgatggatagtaaaattcaatccttcttcatataattatgaatgatctccaataggttaacataatggtgcaaattaaggagcg |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45776976 |
atcctcccaaagagtatgatggatagtaaaattcaatccttcttcatataattatgaatgatctctaataggttaacataatggtgcaaattaaggagcg |
45777075 |
T |
|
| Q |
148 |
tttcctgtagtaatcaattgcatttcttgaaatgagtctcaatagcaaaccacccttgttagccctgcttgcccgcaaggtttaataaccaacaccacat |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45777076 |
tttccagtagtaatcaattgcatttcttgaaatgagtctcaatagcaaaccacgcttgttagccctgcttgcccgcaaggtttaataaccaacaccacat |
45777175 |
T |
|
| Q |
248 |
cttgaatttctgtataaagcaattgtgaacaagaaaattaattttaggtttctgtaaatgtgaacaaaatctcatacacaaattcagtttcacttcatga |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45777176 |
cttgaatttctgtataaagcaattgtgaacaagaaaattaattttgggtttctgtaaatgtgaacaaaatctcatacacaaattcagtttcacttcatga |
45777275 |
T |
|
| Q |
348 |
agtgttaaaatgttgtttaccacctaattaatttgtaaaatcaatttttcatatgtttatagtttactttataaaccactaagatttacctagg------ |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45777276 |
agtgttaaaatgttgtttaccacctaattaatttgtaaaatcaatttttcaaatctttatagtttactttataaaccactaagatttacctaggttaaca |
45777375 |
T |
|
| Q |
442 |
-ttaacatattgtattaagagtgagaaaaatactgcctctttaccaatttaaaggtctacaattgactgcacattccttaa |
521 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
45777376 |
attaacatattgtattaagtgtgggaaaaatactgcct-tttactaatttaaaggtctacaattgactgcacgttctttaa |
45777455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University