View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_low_5 (Length: 491)
Name: NF14459_low_5
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Complemental strand, 51857117 - 51856659
Alignment:
| Q |
14 |
cacagacaagaacaaatgaacattaacctctctcactacaagaaaaatttcatatccaaatttatctttccttctgattgaaattgattggtaagtggta |
113 |
Q |
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| T |
51857117 |
cacagacaagaacaaatgaacattaacctctctcactacaagaaaaatttcatatccaaatttatctttcctgctgattgaaatcgattggtaagtggta |
51857018 |
T |
|
| Q |
114 |
acccttcatttatcttttgttccatatcccaattgaaacttttttcctttcaatttctttttattgctttctagatccaacgatgtgttgcatgataatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51857017 |
acccttcatttatcttttgttccatatcccaattgaaacttttttcctttcaatt-ctttttattgctttctagatccaacgatgcgttgcatgataatc |
51856919 |
T |
|
| Q |
214 |
tttattatgttttccatttgttgttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856918 |
tttattatgttttccatttgttgttattttgaagttccaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcat |
51856819 |
T |
|
| Q |
314 |
tatcatgtagtacaggttttcttctagatctagttccctttctttattttccctttttcttatttgtgtcgtgttaagaaaaattaaagtttaattttta |
413 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51856818 |
tatcatgtagtacaggttatcttctagatctagttccctttctttattttccctttttcttatttgtgctgtgttaagaaaaattaaagtttaattttta |
51856719 |
T |
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| Q |
414 |
ttattaaagtttgaagggtaacaagccactcttatattggttgttgattattaaacaggg |
473 |
Q |
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| T |
51856718 |
ttattaaagtttgaagggtaacaagccactcttatattggttgttgattattaaacaggg |
51856659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 452
Target Start/End: Complemental strand, 51856569 - 51856538
Alignment:
| Q |
421 |
agtttgaagggtaacaagccactcttatattg |
452 |
Q |
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| T |
51856569 |
agtttgaagggtaacaagccactcttatattg |
51856538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 53 - 452
Target Start/End: Complemental strand, 8946112 - 8945724
Alignment:
| Q |
53 |
aagaaaaatttcatatccaaatttatctttccttctgattgaaattgattggtaagtggtaacccttcatttatcttttgttccatatcccaattgaaac |
152 |
Q |
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| T |
8946112 |
aagaaaaatttcatatccaaatttatctttcctgctgattgaaatcgattgctaagtggtaacccttcatttatcttttgttccatatcccaattgaaac |
8946013 |
T |
|
| Q |
153 |
ttttttcctttcaatttctttttattgctttctagatccaacgatgtgttgcatgataatctttattatgttttccatttgttgttattttgaagtttca |
252 |
Q |
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| T |
8946012 |
ttttttcctttcaatttcattttattgctttctagatccaacgatgtgttgcatgataatctttattatgtt-----------gttattttgaagtttca |
8945924 |
T |
|
| Q |
253 |
attataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggacccttcattatcatgtagtacaggttttcttctagatctagttccct |
352 |
Q |
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| T |
8945923 |
attataacggcttcaaagcacatcgtgaaggagctaaatgatttttagaacgacccttcattatcatgtagtacaggttatcttctagatctagttccct |
8945824 |
T |
|
| Q |
353 |
ttctttattttccctttttcttatttgtgtcgtgttaagaaaaattaaagtttaatttttattattaaagtttgaagggtaacaagccactcttatattg |
452 |
Q |
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| T |
8945823 |
ttctttattttccctttttcttatttgtgctgtgttaagaaaaattaaagtttgatttttattattaaagtttgaagggtaacaagccactcttatattg |
8945724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 211 - 472
Target Start/End: Complemental strand, 43263171 - 43262909
Alignment:
| Q |
211 |
atctttattatgttttccatttgttgttattttgaagtttcaattataacggcttcaaagcgcatcgtgaaggagctaaatgatttttagaaggaccctt |
310 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||| ||||||||||||| |
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| T |
43263171 |
atctttattatgtttttcatttgttgttattttgaagtttcaattattacggcttcaaagtgcatcgtgaatgagctaaaggatttgtagaaggaccctt |
43263072 |
T |
|
| Q |
311 |
cattatcatgtagtacaggttttcttctagatctagttccctttctttattttccctttttcttatttgtgtcgtgtt-aagaaaaattaaagtttaatt |
409 |
Q |
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|| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| |
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| T |
43263071 |
caacatcatgcagtacaggttatcttctagatctagttccctttctttattttccctttttcttatttgtgctgtgttaaaaaaaaagaaaagtttaatt |
43262972 |
T |
|
| Q |
410 |
tttattattaaagtttgaagggtaacaagccactcttatattggttgttgattattaaacagg |
472 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
43262971 |
tttattattaaagtttgaagggtaacaatccactctcatattggttgttgattattgaacagg |
43262909 |
T |
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