View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14459_low_9 (Length: 386)
Name: NF14459_low_9
Description: NF14459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14459_low_9 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 49350226 - 49349854
Alignment:
| Q |
1 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgannnnnnnggcagagacatctataaatatatatgaagagcttgttaagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49350226 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgatttttttggcagagacatctataaatatatatgaagagcttgttaagg |
49350127 |
T |
|
| Q |
101 |
aaggtattaat-----taagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagta |
195 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49350126 |
aaggtattaatataattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagt----a |
49350031 |
T |
|
| Q |
196 |
aaagtggaaaatctatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttgtctttcaagggcttt |
295 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49350030 |
aaagtggaaaatttatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttgtctttcaagggcttt |
49349931 |
T |
|
| Q |
296 |
atgtgctcattgtagactaaaacttctaggcgt-ttttcccctcctttttgcctggtggaaactaaagggtattgtt |
371 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49349930 |
atgtgctcattgtagactaaaacttctaggcgttttttcccctcctttttgcctggtggaaactaaagggtattgtt |
49349854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 143 - 358
Target Start/End: Complemental strand, 49361998 - 49361787
Alignment:
| Q |
143 |
tactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagtaaaagtggaaaatctatgtcccatggcctcagctcaaagtgttgtaat |
242 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| || ||||||||||||| ||||||||||||||||| |
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| T |
49361998 |
tactaagaatgatcctctactgccattgaagaacttagatcaaggagt----aaaagtggaaaatttacgtcccatggcctcggctcaaagtgttgtaat |
49361903 |
T |
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| Q |
243 |
tgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgtgctcattgtagactaaaacttctaggcgttttt-cccctcctt |
341 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||| | ||| | |
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| T |
49361902 |
tgagggatatttaaattttgaataattggattcatttgtctttcaagggctttatgtgctca-tgtagactaaaaattaaaggcatttttattcttccat |
49361804 |
T |
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| Q |
342 |
tttgcctggtggaaact |
358 |
Q |
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||||||||||||||||| |
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| T |
49361803 |
tttgcctggtggaaact |
49361787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 250533 - 250168
Alignment:
| Q |
1 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaattt-gagctgannnnnnnggcagagacatctataaatatatatgaagagcttgttaag |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
250533 |
tgtggcgtaacttcaagtccaagaaagatgcactcccttaaattttgagctgatttttttggcagagacatctataaatatatatgaagagcttgttaag |
250434 |
T |
|
| Q |
100 |
gaaggtattaattaagaagaagtgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagtgagtaaaag |
199 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
250433 |
gaaggtattaattaagaag---tgtatcaataaacatacagtatactgagaatgatcctctactgccatcaaagaacttagatcaaagagt----aaaag |
250341 |
T |
|
| Q |
200 |
tggaaaatctatgtcccatggcctcagctcaaagtgttgtaattgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgt |
299 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250340 |
tggaaaatttatgtcccatggcctcagctcaaagtgttgcaattgagggatatttgaattttgtataattggattcatttgtctttcaagggctttatgt |
250241 |
T |
|
| Q |
300 |
gctcattgtagactaaaacttctaggcgt-ttttcccctcctttttgcctggtggaaactaaagggtattgtt |
371 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250240 |
gctcattgtagactaaaacttctaggcgttttttcccctcctttttgcctggtggaaactaaagggtattgtt |
250168 |
T |
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