View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1445_low_1 (Length: 396)
Name: NF1445_low_1
Description: NF1445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1445_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 382
Target Start/End: Complemental strand, 42638519 - 42638148
Alignment:
| Q |
9 |
gaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatc |
108 |
Q |
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| T |
42638519 |
gaagaatatggtgcgcaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatc |
42638420 |
T |
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| Q |
109 |
accacactttttcgtatcattaaaagttatgatatggcagagtacttgaaactggaattcaagaaggtaaatgaatacctggttgctaaatttgtattag |
208 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||| |
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| T |
42638419 |
accacactttttcgtatcataaaaagttatgatatggcagagtacttgaaactggaattcatgaaggtaaatgaatatctggttgccaaatttgcattag |
42638320 |
T |
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| Q |
209 |
ttttctgacgaaagtatgggattgacacaagactttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatctt |
308 |
Q |
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| T |
42638319 |
tgttttgacgaaagtatgggact--cacaagactttcttcaaattgcaggaaactggatttgctcatatgaggatttgcgacggagttggttcttatctt |
42638222 |
T |
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| Q |
309 |
cagatgtgtggtctgttggctaagtttgctcttgttcgcgaaactgctaaagctgcatgagtaggtcctaagtg |
382 |
Q |
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| T |
42638221 |
cagatgtgcggtctgttggctaagtttgctcttgttcgcgacactgctaacgctgcatgagtaggtcctaagtg |
42638148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 42566433 - 42566552
Alignment:
| Q |
9 |
gaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42566433 |
gaagaatatggtgcgtaatgtgattgaagggaatttcgatgaggcttgttctgggctcaagcaattgtatgacttgggatattcccccacagatatcatc |
42566532 |
T |
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| Q |
109 |
accacactttttcgtatcat |
128 |
Q |
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|||||| |||||| |||||| |
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| T |
42566533 |
accacaatttttcatatcat |
42566552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 42566560 - 42566603
Alignment:
| Q |
339 |
cttgttcgcgaaactgctaaagctgcatgagtaggtcctaagtg |
382 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42566560 |
cttgttcgcgacactgctaaagctgcatgagtaggtcctaagtg |
42566603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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