View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1445_low_2 (Length: 353)
Name: NF1445_low_2
Description: NF1445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1445_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 336
Target Start/End: Original strand, 37057827 - 37058149
Alignment:
| Q |
14 |
agattaaagatggtttggaaggatccaatcctctgaaaaaatggatcttaacctggtcagaaacaacaatattcaacaaaacttttagatacttaaaaag |
113 |
Q |
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| T |
37057827 |
agattaaagatggtttggaaggatccaatcctctgaaaaaatggatcttaacctggtcagaaacaacaatattcaacaaaacttttagatacttaaagag |
37057926 |
T |
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| Q |
114 |
tattcatctaatcacaattatggatatattttttaaaatctcatgtggatgggaccattctattagcatgtgatgaacctttagatataagtaaaacaaa |
213 |
Q |
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| T |
37057927 |
tattcatctaatcacaattgtggatatattttttaaaatctcatgtggatgggaccattctattagcatgtgatgaacctttagatataagtaaaacaaa |
37058026 |
T |
|
| Q |
214 |
ctcttaaacttgagggctgaataaagtttggaagttgaaataacattgcaacaacatctttgatcaaatattacaatccttgtgttaatttttaagtgaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058027 |
ctcttaaacttgagggctgaataaagtttggaagttgaaataacattgcaacaacatctttgatcaaatattacaatccttgtgttaatttttaagtgaa |
37058126 |
T |
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| Q |
314 |
gaaaaaagggaaaacttcactag |
336 |
Q |
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| T |
37058127 |
gaaaaaagggaaaacttcactag |
37058149 |
T |
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