View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1445_low_3 (Length: 235)
Name: NF1445_low_3
Description: NF1445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1445_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 55697004 - 55697099
Alignment:
| Q |
1 |
acattgcagaacaaaatatctgagcacgcaataacaacctagattaagagatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
96 |
Q |
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| T |
55697004 |
acattgcagaacaaaatatctgaggacgcaataacaacctagattaagagatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
55697099 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 55697407 - 55697453
Alignment:
| Q |
50 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
96 |
Q |
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| T |
55697407 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
55697453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 32012017 - 32012145
Alignment:
| Q |
98 |
aagaagttgaaggctttgcatgaggtgtacgagggaggatgcatgagtcatcgttcagacaggccctagatataagttgtctttattggctcaagcatgt |
197 |
Q |
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| T |
32012017 |
aagaagttgaaggctttgcatgaggggaacaggggaggatgcatgagtcattgtttagacaggccctagatataagttgtctttattggctcaagcatgt |
32012116 |
T |
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| Q |
198 |
catc----acattattgaatatggtatat |
222 |
Q |
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| T |
32012117 |
catttataacattattgaatatggtatat |
32012145 |
T |
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