View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14460_high_11 (Length: 408)
Name: NF14460_high_11
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 13888678 - 13888494
Alignment:
| Q |
50 |
tagctcaaagtgatgacatcaaaatctctaatataaaatttgaatttcttctcatatcatattgaactaatatctttctctccacttgttttgttgtttg |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13888678 |
tagctcaaagtgatgacatcaaaatctctaatataaaattcgaatttcttctcatatcatattgaactactatctttctctccacttgttttgttgtttg |
13888579 |
T |
|
| Q |
150 |
cacgatcctatttgcgaaatgagtggcacttaatgaatggcctttaagactcggaggagaaaaatgtttttattcgacaattaag |
234 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13888578 |
cacgatcctatttacgaaatgagtggcacttaatgaatggcctttaagactcggaggagaaaaatgtttttattcgagaattaag |
13888494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 230 - 408
Target Start/End: Complemental strand, 13887236 - 13887060
Alignment:
| Q |
230 |
ttaagtctaatgattttattttatgatcacatagttcaactaagatatgtttgtggagagagaatcaacannnnnnnaatttattccatttatggaaaaa |
329 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
13887236 |
ttaagtctaatgattttattttaggatcacatagttgaactatgatacaattgtggagagagaat-aacagttttt-aatttaatccatttatggaaaaa |
13887139 |
T |
|
| Q |
330 |
tatgtttattgttgttcgaacgtatcgactatatgtgatgtgtgagatgaccaattcatcaacatgttgacaaataatc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13887138 |
tatgtttattgttgttcgaacgtatcgactacatgtgatgtgtgagatgaccaattcatcaacatgttgagaaataatc |
13887060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 13888745 - 13888708
Alignment:
| Q |
14 |
ggacatcatcggaaagcatcatttgccaacatgagcta |
51 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13888745 |
ggacctcatcggaaagcatcatttgccaacatgagcta |
13888708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University