View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_high_12 (Length: 379)
Name: NF14460_high_12
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 137 - 367
Target Start/End: Original strand, 7035446 - 7035665
Alignment:
| Q |
137 |
gccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaa |
236 |
Q |
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| T |
7035446 |
gccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaaccaagttcaactcactatagggaaa |
7035545 |
T |
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| Q |
237 |
agaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacattgattataagtagcttgacatatcaaagaattttcccct |
336 |
Q |
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| T |
7035546 |
agaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacatt-----------gcttgacatatcaaagaattttcccct |
7035634 |
T |
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| Q |
337 |
caacaaaggtagaatgaaatagccttcaaac |
367 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7035635 |
caacaaaggtagaatgaaatagccttcaaac |
7035665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 139 - 367
Target Start/End: Original strand, 7896681 - 7896909
Alignment:
| Q |
139 |
caacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaag |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| |
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| T |
7896681 |
caacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcacaaagacacattaactaagttcaactcaatatagggaaaag |
7896780 |
T |
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| Q |
239 |
aataataatacattgatttc--------gtttgaagc-------atgccagtaaaaaacatgtgttaaaaacattgattataagtagcttgacatatcaa |
323 |
Q |
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| T |
7896781 |
aataataatacagtgatttcgtgattttgtttgaagcatgcatgatgccagtaaaaaacatgtgttaaaaaca---------------ttgacatatcaa |
7896865 |
T |
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| Q |
324 |
agaattttcccctcaacaaaggtagaatgaaatagccttcaaac |
367 |
Q |
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| T |
7896866 |
agaattttcccctcaacaaaggtagaatgaaatagccttcaaac |
7896909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 7035309 - 7035401
Alignment:
| Q |
1 |
aaatctaaacagcaccaaattgtgaacgagaaaataaaagataaacatcctaaaatctgcagatatatatacaagtcagagctaactagaatt |
93 |
Q |
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| T |
7035309 |
aaatctaaacagcaccaaattgtgaacgagaaaataaaagataaacatcctaaaatctgcagatatatatacaagtcagagctaactagaatt |
7035401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 7896543 - 7896635
Alignment:
| Q |
1 |
aaatctaaacagcaccaaattgtgaacgagaaaataaaagataaacatcctaaaatctgcagatatatatacaagtcagagctaactagaatt |
93 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| |
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| T |
7896543 |
aaatctaaacagcaccagattgtaaacgagaaaataaaagataaacatcctaaaatttgcagatatatatacaagtcggagctaactataatt |
7896635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 223 - 361
Target Start/End: Original strand, 7039080 - 7039216
Alignment:
| Q |
223 |
tcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacattgattataagtagcttgacatatca |
322 |
Q |
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||||| ||||||||||||||||| || | ||| || ||||||||| | |||||||| ||||||| ||||||||||| ||| ||| ||||||||| ||| |
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| T |
7039080 |
tcactttagggaaaagaataatactagaaagatgtcatttgaagcagggcagtaaaa--catgtgtgaaaaacattgaatatgagtggcttgacatttca |
7039177 |
T |
|
| Q |
323 |
aagaattttcccctcaacaaaggtagaatgaaatagcct |
361 |
Q |
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| T |
7039178 |
aagaattttcccctcaacaagggtagtatgaaatagcct |
7039216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 7880819 - 7880935
Alignment:
| Q |
182 |
atctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaa |
281 |
Q |
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||||||||||| ||| |||| ||||||| || |||| |||||||| ||||||||||||||||| || | ||| || ||||||||| | |||| |||| |
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| T |
7880819 |
atctttgacaacctcgccaagacacatttacaaagtctaactcactttagggaaaagaataatactagaaagatgtcatttgaagcagggcagt--aaaa |
7880916 |
T |
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| Q |
282 |
catgtgttaaaaacattga |
300 |
Q |
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| T |
7880917 |
catgtgtgaaaaacattga |
7880935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 29379045 - 29379148
Alignment:
| Q |
142 |
catagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaagaat |
241 |
Q |
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|||||| |||||||| |||||||| | ||||||||| ||||| |||||| |||||||| ||||||| | |||| |||||||| |||| |||||||| |
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| T |
29379045 |
catagtaaccatccactcataaatttttctgtagtatcacatccttgacagcctcaccaagacacatttataaagtataactcactttaggtaaaagaat |
29379144 |
T |
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| Q |
242 |
aata |
245 |
Q |
| |
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|||| |
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| T |
29379145 |
aata |
29379148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 29380083 - 29380130
Alignment:
| Q |
320 |
tcaaagaattttcccctcaacaaaggtagaatgaaatagccttcaaac |
367 |
Q |
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||||||||||||||| ||||||| ||||| ||||||||||||| |||| |
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| T |
29380083 |
tcaaagaattttcccttcaacaagggtagtatgaaatagcctttaaac |
29380130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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