View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14460_high_13 (Length: 374)
Name: NF14460_high_13
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 43588638 - 43588292
Alignment:
| Q |
22 |
gcgcctgcgcctccatttcaatggctactactagtagcaacgatgaagccaagcagaacatcttcaacgaactcgaaaccataaccgatgaatttgacca |
121 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43588638 |
gcgcccgcgcctccatttcaatggctactactagtagcaacgatgaagccaagcagaacatcttcaacgaactcgaaaccataaccgatgaatttgacca |
43588539 |
T |
|
| Q |
122 |
tcccttcactccaaaccagattgaaactattgccaagtttatctgcgttgactatgatgatcgacgtctaagaattcaaggtgatatcgtgtcaaaatat |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43588538 |
tcccttcactccagaccagattgaaactattgccaagtttatctgcgttgactatgatgatcgacgtctaagaattcaaggtgatatcgtgtcaaaatat |
43588439 |
T |
|
| Q |
222 |
tttgacaaaactcctcaattcttagcatttggatatcttgaccaaatgcttgagaaactaagccaacatactcctcttgatatggtggaaaagcatgttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43588438 |
tttgacaaaactcctcaattcttagcatttggatatcttgaccaaatgcttgagaaactaagccaacatactcctcttgatatggtggaaaagcatgttg |
43588339 |
T |
|
| Q |
322 |
aaatcttttcgttcttgattcaagaactcaaaggttatattcttgga |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
43588338 |
aaatcttttcgttcttgattcaagaactcaaaggttattttgttgga |
43588292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University