View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_high_2 (Length: 635)
Name: NF14460_high_2
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Complemental strand, 28326250 - 28325641
Alignment:
| Q |
18 |
aatctcaatctgtaaagcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataagataactatgatagttc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28326250 |
aatctcaatctgtaaagcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataagataactatgatagttc |
28326151 |
T |
|
| Q |
118 |
cacttaaaaccagcaccattttcattttttagtacgatataattgtaaaagagcattgctttgtgaatctggtggcggacacaaaaaccatggagaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28326150 |
cacttaaaaccagcaccattttcattttttagtacgatataattgtaaaagagcattgctttgtgaatctggtggcggacacaaaaaccatggagaagaa |
28326051 |
T |
|
| Q |
218 |
tattcaaagtttcctcagcagtaggacggtgaccgttgtttatgattttatggaagaaagacatggcggaaaacaggttagcatcgaaagcgtgagcttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
28326050 |
tattcaaagtttcctcagcagtaggacggtgaccgttgtttatgattttatggaagaaagacatggcggaaaacatgttaccatcgaaagcgtgagcttt |
28325951 |
T |
|
| Q |
318 |
gatgaggattgtccaagtatgaatgtctgggagaacacgttgaagatggttgttgtgggattcctccaattgttgagcaaaggaaagaacagtagggtga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325950 |
gatgaggattgtccaagtatgaatgtctgggagaacacgttgaagatggttgttgtgggattcctccaattgttgagcaaaggaaagaacagtagggtga |
28325851 |
T |
|
| Q |
418 |
tatcccattctaagaagggaagataaaacggcgttatattcggatatggaagcgtaaccatcagagagattgttttcaaaccaagtaacagcagaaatgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325850 |
tatcccattctaagaagggaagataaaacggcgttatattcggatatggaagcgtaaccatcagagagattgttttcaaaccaagtaacagcagaaatgt |
28325751 |
T |
|
| Q |
518 |
acttgttgaagcataagtaatcaggaagaataaccctagacccagaatcatcatcatagggaatagtgttagtgttattgttattgttagtgttagagag |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325750 |
acttgttgaagcataagtaatcaggaagaataaccctagacccagaatcatcatcatagggaatagtgttagtgttattgttattgttagtgttagagag |
28325651 |
T |
|
| Q |
618 |
tacctttgat |
627 |
Q |
| |
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|||||||||| |
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| T |
28325650 |
tacctttgat |
28325641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 21159296 - 21159407
Alignment:
| Q |
18 |
aatctcaatctgtaaagcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataagataactatgatagttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
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| T |
21159296 |
aatctcaatctgtaaagcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataatataactatcatggttc |
21159395 |
T |
|
| Q |
118 |
cacttaaaacca |
129 |
Q |
| |
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||| ||||||| |
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| T |
21159396 |
aactaaaaacca |
21159407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 28231421 - 28231327
Alignment:
| Q |
34 |
gcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataagataactatgatagttccacttaaaacc |
128 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||| |||||||||| || |||||||| |||||| | || |||| ||| |||||| |
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| T |
28231421 |
gcctttctcaacaactggattgctgtttgagtttctcctatctcacataatccattgcttagaatataataactttcatcgttcaactgaaaacc |
28231327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 47569078 - 47569003
Alignment:
| Q |
34 |
gcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataagataactat |
109 |
Q |
| |
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|||| |||||||| | ||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||| |
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| T |
47569078 |
gcctgtctcaacatattgatggctaattgagtttctcctatctcacataatccattgatcagaataagataactat |
47569003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 6327184 - 6327225
Alignment:
| Q |
317 |
tgatgaggattgtccaagtatgaatgtctgggagaacacgtt |
358 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||| |
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| T |
6327184 |
tgatgaggattgaccaagtatgaatgtctggtagaacacgtt |
6327225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 2657685 - 2657713
Alignment:
| Q |
89 |
tgattagaataagataactatgatagttc |
117 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2657685 |
tgattagaataagataactatgatagttc |
2657713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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