View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_high_20 (Length: 264)
Name: NF14460_high_20
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 53000568 - 53000675
Alignment:
| Q |
157 |
tgtaggaatttgattttaactttagagtaagattacaagaatgaagagttgtcctttgctcagaaataaggtctatttatagtttagaatcataggcaag |
256 |
Q |
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| T |
53000568 |
tgtaggaatttgattttaactttagagtaagattacaagaatgaagagttgtcctttgctcagaaatatggtctatttatagtttagaatcatagacaag |
53000667 |
T |
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| Q |
257 |
gcattaat |
264 |
Q |
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|||||||| |
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| T |
53000668 |
gcattaat |
53000675 |
T |
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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 53000420 - 53000469
Alignment:
| Q |
9 |
ctcacacaagatcatagtagacaaaagcttaaaatatgaagacataatga |
58 |
Q |
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| T |
53000420 |
ctcacacaagatcatattaaacaaaaacttaaaatatgaaggcataatga |
53000469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 16766549 - 16766595
Alignment:
| Q |
9 |
ctcacacaagatcatagtagacaaaagcttaaaatatgaagacataa |
55 |
Q |
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|||||||| |||||||||||||||||| |||||| |||||||||||| |
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| T |
16766549 |
ctcacacatgatcatagtagacaaaagattaaaacatgaagacataa |
16766595 |
T |
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