View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_high_26 (Length: 237)
Name: NF14460_high_26
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2833587 - 2833367
Alignment:
| Q |
1 |
ctatgatgagcaagaataggcaactaaagctttacacaaataaccctagtagtaattggtgggggtatagaagcaaaaagtggaatcacacaacttttga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833587 |
ctattatgagcaagaataggcaactaaagctttacacaaataaccctagtagtaattggtgggggtatagaagcaaaaagtggaatcacacaacttttga |
2833488 |
T |
|
| Q |
101 |
gcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaagaaaggtaaagagtattatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833487 |
gcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaagaaaggtaaagagtattatgct |
2833388 |
T |
|
| Q |
201 |
aaagttggaaaggcttggaaa |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
2833387 |
aaagttggaaaggcttggaaa |
2833367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 2842044 - 2842253
Alignment:
| Q |
12 |
aagaataggcaactaaagctttacacaaataaccctagtagtaattggtgggggtatagaagcaaaaagtggaatcacacaacttttgagcatcctgcaa |
111 |
Q |
| |
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||||||||||| | ||| ||||||| || || || |||| | |||||| |||||||||||| |||||||| |||||||||||||||||| || |||| |
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| T |
2842044 |
aagaataggcagttgaagatttacactaacaatccaagtaatgattggtttaggtatagaagcacaaagtggagtcacacaacttttgagcacccggcaa |
2842143 |
T |
|
| Q |
112 |
gatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaagaaaggtaaagagtattatgctaaagttggaaa |
211 |
Q |
| |
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| |||| ||| || ||| |||||||| |||||||| |||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
2842144 |
gttttgaaacacttgctttggaaccaaaaaagaaagaagagattctaaatgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaa |
2842243 |
T |
|
| Q |
212 |
ggcttggaaa |
221 |
Q |
| |
|
||||||||| |
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|
| T |
2842244 |
agcttggaaa |
2842253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 2910235 - 2910091
Alignment:
| Q |
77 |
aaagtggaatcacacaacttttgagcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttc |
176 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||| ||| || ||||||||||| || ||||| ||||||| |||| |||||| |||| ||| |
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| T |
2910235 |
aaagtggagtcacacaacttttgagcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaggaagagatcataaacgatcttgttaaattc |
2910136 |
T |
|
| Q |
177 |
aagaaaggtaaagagtattatgctaaagttggaaaggcttggaaa |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
2910135 |
aagaaagggaaagagtattatgctaaagttggaaaggcgtggaaa |
2910091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 2866196 - 2866055
Alignment:
| Q |
80 |
gtggaatcacacaacttttgagcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaag |
179 |
Q |
| |
|
||||| |||||||| ||||| ||| |||||||| |||| ||| || ||||||||||| || |||||| ||||||| |||| |||||| |||| |||||| |
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|
| T |
2866196 |
gtggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttgttaaattcaag |
2866097 |
T |
|
| Q |
180 |
aaaggtaaagagtattatgctaaagttggaaaggcttggaaa |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2866096 |
aaagggaaagagtattatgctaaagttggaaaggcttggaaa |
2866055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 2860817 - 2860676
Alignment:
| Q |
80 |
gtggaatcacacaacttttgagcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaag |
179 |
Q |
| |
|
||||| |||||||| ||||| || |||||||| |||| ||| || ||||||||||| || |||||| ||||||| |||| |||||| |||| |||||| |
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|
| T |
2860817 |
gtggagtcacacaaattttgcacaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttgttaaattcaag |
2860718 |
T |
|
| Q |
180 |
aaaggtaaagagtattatgctaaagttggaaaggcttggaaa |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2860717 |
aaagggaaagagtattatgctaaagttggaaaggcttggaaa |
2860676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 2885386 - 2885245
Alignment:
| Q |
80 |
gtggaatcacacaacttttgagcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaag |
179 |
Q |
| |
|
||||| |||||||| ||||| || |||||||| |||| ||| || ||||||||||| || |||||| ||||||| |||| |||||| |||| |||||| |
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|
| T |
2885386 |
gtggagtcacacaaattttgcacaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttgttaaattcaag |
2885287 |
T |
|
| Q |
180 |
aaaggtaaagagtattatgctaaagttggaaaggcttggaaa |
221 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2885286 |
aaagggaaagagtattatgctaaagttggaaaggcttggaaa |
2885245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 2828792 - 2828895
Alignment:
| Q |
118 |
gaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaagaaaggtaaagagtattatgctaaagttggaaaggcttg |
217 |
Q |
| |
|
|||||||||||||||| ||| | |||||| |||| ||| ||||||||||| |||||||||| | |||||||||||| ||| ||||||| || |||||||| |
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|
| T |
2828792 |
gaaccctagctatggatccaaacaagaaagaagaaattataaatgatcttgttaagttcaaaacaggtaaagagtactatactaaagtcgggaaggcttg |
2828891 |
T |
|
| Q |
218 |
gaaa |
221 |
Q |
| |
|
|||| |
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|
| T |
2828892 |
gaaa |
2828895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 14577866 - 14577991
Alignment:
| Q |
96 |
tttgagcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaagaaaggtaaagagtatt |
195 |
Q |
| |
|
||||| || |||||||| || | ||| || |||||||| || | |||||| ||||||| || | |||||| ||||||||||| |||||||||||| | |
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|
| T |
14577866 |
tttgatcaccctgcaaggttcgaaacacttgctatggatgcaaagaagaaagaagagataatagacgatcttgttaagttcaaggcaggtaaagagtact |
14577965 |
T |
|
| Q |
196 |
atgctaaagttggaaaggcttggaaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14577966 |
atgctaaagttggaaaggcttggaaa |
14577991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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