View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14460_high_4 (Length: 549)
Name: NF14460_high_4
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_4 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Original strand, 43093295 - 43093830
Alignment:
| Q |
18 |
acctgatagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43093295 |
acctgatagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaa |
43093394 |
T |
|
| Q |
118 |
aaggcttgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcatagaaatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43093395 |
aaggcttgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcatagaaatt |
43093494 |
T |
|
| Q |
218 |
caatgatgtccattaaaacttttgacgtctacatatttaagacaagtatggggaagctttaactatgtaggatatacaattttgaagttttaataaaatg |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43093495 |
caatgatgtccattaaaactttagacgtctacatatttaagacaagtatgaggaagctttaactatgtaggatatagaattttgaagttttaataaaatg |
43093594 |
T |
|
| Q |
318 |
tgatgtcgtcacatggaagaaacagatacatggaataaacatgctagtaacaatcaccacgg----nnnnnnnnnnnnnnnctaatattcatataagtat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
43093595 |
tgatgtcgtcacatggaagaaacagatacatggaagaaacatgctagtaacaatcaccacggaaaaagaaagaaaaaaaaactcatattcatataagtat |
43093694 |
T |
|
| Q |
414 |
ccatccatatcaaattgcaaataaaaaactattaaacaactatgaacttaccgaaaatgaaatgcaatgtactcatcaacgccttgttgcaaatcacaat |
513 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43093695 |
ccaaccatatcaaattacaaataaaaaactattaaacatctatgaacttaccgaaaatgaaatgcaatgtactcatcaacgccttgttacaaatcacaat |
43093794 |
T |
|
| Q |
514 |
cgacacagatgacaccacagatagactcagtgcacc |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43093795 |
cgacacagatgacaccacagatagactcagtgcacc |
43093830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 43085348 - 43085534
Alignment:
| Q |
24 |
tagaatccaacagaattgaaacccagactcaaatttaacaacccaatcgagattccatttagaattccaaatcccatcactgctttctgctcaaaaggct |
123 |
Q |
| |
|
||||| || ||||||||||| || || ||||||||||| | ||||| ||||||||||||| ||| |||||||| | || |||||||||||||||| || |
|
|
| T |
43085348 |
tagaagccgacagaattgaaccctaggctcaaatttaaaagtccaattgagattccatttaaaatcccaaatccaactacggctttctgctcaaaagcct |
43085447 |
T |
|
| Q |
124 |
tgtgctcgaaaaatttcatttttagtgccacatgaagagaacaaaatgtaacaagaagatgccaacttgtcaatgttgtagctgcat |
210 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||| |||||| ||||||||||| ||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
43085448 |
tgtgctcgaagaatctcattttgagtgccaaatgaagggaacaaaatgtgacaagtagatgccagcttgtcagagttgtagctgcat |
43085534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University