View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14460_high_5 (Length: 503)

Name: NF14460_high_5
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14460_high_5
NF14460_high_5
[»] chr4 (9 HSPs)
chr4 (249-499)||(9128372-9128622)
chr4 (250-499)||(1655580-1655829)
chr4 (250-499)||(45223554-45223803)
chr4 (250-496)||(37153240-37153486)
chr4 (17-162)||(24258299-24258440)
chr4 (161-251)||(24258133-24258225)
chr4 (249-380)||(48078770-48078901)
chr4 (249-380)||(26651475-26651606)
chr4 (249-283)||(39466699-39466733)
[»] chr1 (7 HSPs)
chr1 (249-499)||(23781508-23781758)
chr1 (249-499)||(52635185-52635435)
chr1 (249-380)||(50746387-50746514)
chr1 (247-283)||(9135629-9135665)
chr1 (246-281)||(4682929-4682964)
chr1 (247-283)||(15998322-15998358)
chr1 (249-281)||(45925357-45925389)
[»] chr7 (4 HSPs)
chr7 (250-499)||(12810562-12810811)
chr7 (249-380)||(43872867-43872998)
chr7 (249-283)||(27878837-27878871)
chr7 (250-283)||(27878914-27878947)
[»] chr8 (5 HSPs)
chr8 (249-499)||(3790124-3790374)
chr8 (185-251)||(42935988-42936054)
chr8 (203-251)||(26084313-26084361)
chr8 (249-283)||(40305007-40305041)
chr8 (250-283)||(29007523-29007556)
[»] chr6 (5 HSPs)
chr6 (161-251)||(21762454-21762544)
chr6 (250-283)||(14897043-14897076)
chr6 (250-283)||(28034011-28034044)
chr6 (249-281)||(3750314-3750346)
chr6 (249-281)||(10644259-10644291)
[»] chr5 (1 HSPs)
chr5 (168-251)||(9045542-9045625)
[»] chr3 (3 HSPs)
chr3 (199-229)||(42656132-42656162)
chr3 (250-283)||(16607465-16607498)
chr3 (251-283)||(42605991-42606023)
[»] scaffold0200 (1 HSPs)
scaffold0200 (250-283)||(22413-22446)
[»] chr2 (2 HSPs)
chr2 (251-291)||(3055743-3055783)
chr2 (247-283)||(33618308-33618344)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 249 - 499
Target Start/End: Original strand, 9128372 - 9128622
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9128372 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 9128471  T
Q  349 ccaaaaatgcccttagtttaatactccaatttccatcacaattttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaa 448  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9128472 ccaaaaatgcccttagtttaatactccaatttccatcacagttttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaa 9128571  T
Q  449 acggctctctatactcctctccctctatagtaactccacgaagcccaagcc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9128572 acggctctctatactcctctccctctatagtaactccacgaagcccaagcc 9128622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 250 - 499
Target Start/End: Complemental strand, 1655829 - 1655580
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1655829 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 1655730  T
Q  350 caaaaatgcccttagtttaatactccaatttccatcacaattttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaaa 449  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1655729 caaaaatgcccttagtttaatactccaatttccatcacagttttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaaa 1655630  T
Q  450 cggctctctatactcctctccctctatagtaactccacgaagcccaagcc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1655629 cggctctctatactcctctccctctatagtaactccacgaagcccaagcc 1655580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 250 - 499
Target Start/End: Complemental strand, 45223803 - 45223554
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45223803 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 45223704  T
Q  350 caaaaatgcccttagtttaatactccaatttccatcacaattttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaaa 449  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45223703 caaaaatgcccttagtttaatactccaatttccatcacagttttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaaa 45223604  T
Q  450 cggctctctatactcctctccctctatagtaactccacgaagcccaagcc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45223603 cggctctctatactcctctccctctatagtaactccacgaagcccaagcc 45223554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 250 - 496
Target Start/End: Complemental strand, 37153486 - 37153240
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37153486 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagtaaaattgacttttttcatcatatttaaggctaatatac 37153387  T
Q  350 caaaaatgcccttagtttaatactccaatttccatcacaattttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaaa 449  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37153386 caaaaatgcccttagtttaatactccaatttccatcacagttttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaaa 37153287  T
Q  450 cggctctctatactcctctccctctatagtaactccacgaagcccaa 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37153286 cggctctctatactcctctccctctatagtaactccacgaagcccaa 37153240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 24258440 - 24258299
Alignment:
Q  17 acggtgctagcacaaacaaacataaaaacactacgttagaaagnnnnnnnnntcatttggattaaaagtaaaaacaacacaatattaggattgagagaat 116  Q
    |||||||||||||||| |||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||||||||||||    
T  24258440 acggtgctagcacaaataaacataaaaacactacgttagaaa----aaaaaatcgtttggattaaaagtaaaaacaacacaatattaggattgagagaat 24258345  T
Q  117 taccaattaagcaatgataggagagcatcacttcaactgcacgatc 162  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  24258344 taccaattaagcaatgataggagagtatcacttcaactgcacgatc 24258299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 24258225 - 24258133
Alignment:
Q  161 tcttaacacaacacacatata--gagagagaaaatgtagtgcagtgcatatatgcatgggaaatagggtggatatcaatttacatagaagata 251  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24258225 tcttaacacaacacacatatatagagagagaaaatgtagtgcagtgcatatatgcatgggaaatagggtggatattaatttacatagaagata 24258133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 249 - 380
Target Start/End: Original strand, 48078770 - 48078901
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 348  Q
    ||||| |||| ||||| |||||| ||||||||||||| ||||||  |||| |||||||||||||||||||| ||||||| |||||||||||| || ||||    
T  48078770 atacttcctctgtatcaaaatattagcaaaattcaacaatcttaactgtgtcaaaatataagcaaaattgatttttttcctcatatttaaggatagtata 48078869  T
Q  349 ccaaaaatgcccttagtttaatactccaattt 380  Q
    ||||| || ||||| ||||||||||| |||||    
T  48078870 ccaaatatacccttggtttaatactctaattt 48078901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 380
Target Start/End: Complemental strand, 26651606 - 26651475
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 348  Q
    ||||||||||||| || ||||||||||||||||||||||||||   ||| |||||||||||||||| |||||||| ||| ||||||||||   || ||||    
T  26651606 atactccctccgtgtcaaaatataagcaaaattcaactatcttgactgtaacaaaatataagcaaatttgactttattcctcatatttaaatatagtata 26651507  T
Q  349 ccaaaaatgcccttagtttaatactccaattt 380  Q
     |||| ||||||||  |||||| ||| |||||    
T  26651506 tcaaatatgcccttgctttaattctctaattt 26651475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 39466699 - 39466733
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattca 283  Q
    |||||||||||||||| ||||||||||||||||||    
T  39466699 atactccctccgtatcaaaatataagcaaaattca 39466733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 249 - 499
Target Start/End: Complemental strand, 23781758 - 23781508
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23781758 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 23781659  T
Q  349 ccaaaaatgcccttagtttaatactccaatttccatcacaattttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaa 448  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23781658 ccaaaaatgcccttagtttaatactccaatttccatcacagttttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaa 23781559  T
Q  449 acggctctctatactcctctccctctatagtaactccacgaagcccaagcc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23781558 acggctctctatactcctctccctctatagtaactccacgaagcccaagcc 23781508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 249 - 499
Target Start/End: Original strand, 52635185 - 52635435
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52635185 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 52635284  T
Q  349 ccaaaaatgcccttagtttaatactccaatttccatcacaattttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaa 448  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52635285 ccaaaaatgcccttagtttaatactccaatttccatcacagttttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaa 52635384  T
Q  449 acggctctctatactcctctccctctatagtaactccacgaagcccaagcc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52635385 acggctctctatactcctctccctctatagtaactccacgaagcccaagcc 52635435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 380
Target Start/End: Complemental strand, 50746514 - 50746387
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgactt---ttttcatcatatttaaggctaat 345  Q
    |||||||||| || || ||||||||| |||||||||||||       || ||||||||||||||||||||||||   ||||| ||||||||||   || |    
T  50746514 atactccctctgtgtcaaaatataagtaaaattcaactat-------gtaacaaaatataagcaaaattgactttttttttcctcatatttaaatatagt 50746422  T
Q  346 ataccaaaaatgcccttagtttaatactccaattt 380  Q
    |||||||| ||||||||  |||||| |||||||||    
T  50746421 ataccaaatatgcccttgctttaattctccaattt 50746387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 9135665 - 9135629
Alignment:
Q  247 agatactccctccgtatcgaaatataagcaaaattca 283  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9135665 agatactccctccgtatcaaaatataagcaaaattca 9135629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 4682929 - 4682964
Alignment:
Q  246 aagatactccctccgtatcgaaatataagcaaaatt 281  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4682929 aagatactccctccgtatcaaaatataagcaaaatt 4682964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 15998358 - 15998322
Alignment:
Q  247 agatactccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||||||| || ||||||||||||||||||    
T  15998358 agatactccctccgtttcaaaatataagcaaaattca 15998322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 45925389 - 45925357
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaatt 281  Q
    |||||||||||||||| ||||||||||||||||    
T  45925389 atactccctccgtatcaaaatataagcaaaatt 45925357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 250 - 499
Target Start/End: Original strand, 12810562 - 12810811
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12810562 tactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatatac 12810661  T
Q  350 caaaaatgcccttagtttaatactccaatttccatcacaattttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaaa 449  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12810662 caaaaatgcccttagtttaatactccaatttccatcacagttttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaaa 12810761  T
Q  450 cggctctctatactcctctccctctatagtaactccacgaagcccaagcc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12810762 cggctctctatactcctctccctctatagtaactccacgaagcccaagcc 12810811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 380
Target Start/End: Original strand, 43872867 - 43872998
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 348  Q
    |||||| |||||| || |||||||||||||||||||||||||||  ||| | | |||||||||||| ||||| || ||| | ||||||||   |||||||    
T  43872867 atactctctccgtgtcaaaatataagcaaaattcaactatcttagctgtaatagaatataagcaaatttgaccttattccttatatttaaatataatata 43872966  T
Q  349 ccaaaaatgcccttagtttaatactccaattt 380  Q
    ||||| ||||||||  |||||| |||||||||    
T  43872967 ccaaacatgcccttgctttaattctccaattt 43872998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 27878837 - 27878871
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattca 283  Q
    |||||||||||||||| ||||||||||||||||||    
T  27878837 atactccctccgtatcaaaatataagcaaaattca 27878871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 27878947 - 27878914
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||||||| ||||||||||||||||||    
T  27878947 tactccctccgtatcaaaatataagcaaaattca 27878914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 249 - 499
Target Start/End: Original strand, 3790124 - 3790374
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3790124 atactccctccgtatcgaaatataagcaaaattcaactatcttacttgtgacaaaatataagcaaaattgacttttttcatcatatttaaggctaatata 3790223  T
Q  349 ccaaaaatgcccttagtttaatactccaatttccatcacaattttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaa 448  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3790224 ccaaaaatgcccttagtttaatactccaatttccatcacagttttccacgcgaatgcaattctccaaaccaggttttaatgaatgtattgaaaaactgaa 3790323  T
Q  449 acggctctctatactcctctccctctatagtaactccacgaagcccaagcc 499  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3790324 acggttctctatactcctctccctctatagtaactccacgaagcccaagcc 3790374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 42936054 - 42935988
Alignment:
Q  185 agagaaaatgtagtgcagtgcatatatgcatgggaaatagggtggatatcaatttacatagaagata 251  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  42936054 agagaacatgtagtgcaatgcatatattcatgggaaatagggtggatattaatttacatggaagata 42935988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 26084361 - 26084313
Alignment:
Q  203 tgcatatatgcatgggaaatagggtggatatcaatttacatagaagata 251  Q
    ||||||||| ||||||||||||| ||||||| ||||||||| |||||||    
T  26084361 tgcatatattcatgggaaataggatggatattaatttacatggaagata 26084313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 40305007 - 40305041
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaattca 283  Q
    |||||||||||||||| ||||||||||||||||||    
T  40305007 atactccctccgtatcaaaatataagcaaaattca 40305041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 29007556 - 29007523
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||||||| ||||||||||||||||||    
T  29007556 tactccctccgtatcaaaatataagcaaaattca 29007523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 21762544 - 21762454
Alignment:
Q  161 tcttaacacaacacacatatagagagagaaaatgtagtgcagtgcatatatgcatgggaaatagggtggatatcaatttacatagaagata 251  Q
    ||||| |||||||||| |||| | |||||| |||||||||| ||||||||||| ||||||||| ||||||||  ||||||||| |||||||    
T  21762544 tcttagcacaacacacgtatatatagagaacatgtagtgcaatgcatatatgcctgggaaataaggtggatactaatttacatggaagata 21762454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 14897043 - 14897076
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||||||| ||||||||||||||||||    
T  14897043 tactccctccgtatcaaaatataagcaaaattca 14897076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 28034011 - 28034044
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||||||| ||||||||||||||||||    
T  28034011 tactccctccgtatcaaaatataagcaaaattca 28034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 3750346 - 3750314
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaatt 281  Q
    |||||||||||||||| ||||||||||||||||    
T  3750346 atactccctccgtatcaaaatataagcaaaatt 3750314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 10644259 - 10644291
Alignment:
Q  249 atactccctccgtatcgaaatataagcaaaatt 281  Q
    |||||||||||||||| ||||||||||||||||    
T  10644259 atactccctccgtatcaaaatataagcaaaatt 10644291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 9045625 - 9045542
Alignment:
Q  168 acaacacacatatagagagagaaaatgtagtgcagtgcatatatgcatgggaaatagggtggatatcaatttacatagaagata 251  Q
    ||||||||| |||  | |||||| |||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| |||||||    
T  9045625 acaacacacgtatgtatagagaacatgtagtgcactgcatatattcatggaaaatagggtggatattaatttacatggaagata 9045542  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 42656162 - 42656132
Alignment:
Q  199 gcagtgcatatatgcatgggaaatagggtgg 229  Q
    |||||||||||||||||||||||||||||||    
T  42656162 gcagtgcatatatgcatgggaaatagggtgg 42656132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 16607498 - 16607465
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||||||| ||||||||||||||||||    
T  16607498 tactccctccgtatcaaaatataagcaaaattca 16607465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 42605991 - 42606023
Alignment:
Q  251 actccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||| |||||||||||||||||||||    
T  42605991 actccctccgtttcgaaatataagcaaaattca 42606023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 22446 - 22413
Alignment:
Q  250 tactccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||||||| ||||||||||||||||||    
T  22446 tactccctccgtatcaaaatataagcaaaattca 22413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 3055783 - 3055743
Alignment:
Q  251 actccctccgtatcgaaatataagcaaaattcaactatctt 291  Q
    ||||||||| | || ||||||||||||||||||||||||||    
T  3055783 actccctccatgtcaaaatataagcaaaattcaactatctt 3055743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 33618344 - 33618308
Alignment:
Q  247 agatactccctccgtatcgaaatataagcaaaattca 283  Q
    ||||||||||||||| || ||||||||||||||||||    
T  33618344 agatactccctccgtttcaaaatataagcaaaattca 33618308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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