View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14460_high_6 (Length: 497)
Name: NF14460_high_6
Description: NF14460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14460_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 456
Target Start/End: Complemental strand, 13623826 - 13623373
Alignment:
| Q |
10 |
gaagaatattgttaacgttggatgagttgacagctttaaaatcctaggatattaaaatggaagaagtgttaaagtaagccaattttgttagtattagtta |
109 |
Q |
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| T |
13623826 |
gaagaatattgttaacgttggatgagttgacagctttaaaatcctaggatattaaaatggaagaagtgttaaagtaagccaattttgttagtattagtta |
13623727 |
T |
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| Q |
110 |
gtccattagaaagtgggttaggaattaattagtggtcagttactcagtttagttggtgcaattgaattgtaaaattaaataagacaaatagttagttata |
209 |
Q |
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| T |
13623726 |
gtccattagaaagtgggttaggaattaattagtggtcagttactcagtttagttggtgcaattgaattgtaa----aaataagacaattagttagttata |
13623631 |
T |
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| Q |
210 |
tgatttatcatctttttcaatcaagtttaattgcatgagtattgtattgtggttggacatgggacacaacatggagctattgtggatcattttttgtagc |
309 |
Q |
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| T |
13623630 |
tgatttatcatctttttcaatcaaatttaattgcatga-----gtattgtggttggacatgggacacaacatggagctattgtggatcattttttgtagc |
13623536 |
T |
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| Q |
310 |
atggtgt---------------gcata-gaaaaacgttagacacttaatctggttgaaggtggtttggtgcctttagttgccaagaaacaataatatgta |
393 |
Q |
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| T |
13623535 |
atggtgtgggtggctcaggtaggcataggaaaaacgttagacacttaatctggttgaaggtggtttggtgcctttagttgccaagaaacaataatatgta |
13623436 |
T |
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| Q |
394 |
tttttgttcatattctatttgtattgtcggattatagtttataagtaataagggaagccttgt |
456 |
Q |
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| T |
13623435 |
tttttgttcatattctatttgtattgtcggattatagtttataagtaataagggaagccttgt |
13623373 |
T |
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